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AT1G54500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rubredoxin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rubredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, metal ion binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubredoxin, iron-binding site (InterPro:IPR018527), Rubredoxin-type Fe(Cys)4 protein (InterPro:IPR004039); Has 3108 Blast hits to 3080 proteins in 1023 species: Archae - 186; Bacteria - 2587; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1773eggNOG:ENOG410IZ3YEMBL:AC005287EMBL:AF370575EMBL:AF378897EMBL:AY052747EMBL:AY085877
EMBL:CP002684EnsemblPlants:AT1G54500EnsemblPlants:AT1G54500.1entrez:841892Gene3D:2.20.28.10GeneID:841892GO:GO:0005506
GO:GO:0009507GO:GO:0009535GO:GO:0010207GO:GO:0016021Gramene:AT1G54500.1hmmpanther:PTHR10909hmmpanther:PTHR10909:SF287
HOGENOM:HOG000242736InterPro:IPR004039InterPro:IPR018527InterPro:IPR024934InterPro:IPR024935KEGG:ath:AT1G54500OMA:FITISYP
Pfam:PF00301Pfscan:PS50903PhylomeDB:Q9SLI4PIR:H96586PRINTS:PR00163PROSITE:PS00202PROSITE:PS50903
Proteomes:UP000006548RefSeq:NP_175852.1scanprosite:PS00202SMR:Q9SLI4STRING:3702.AT1G54500.1SUPFAM:SSF57802TAIR:AT1G54500
TMHMM:TMhelixUniGene:At.23670UniProt:Q9SLI4
Coordinates (TAIR10) chr1:-:20357084..20357671
Molecular Weight (calculated) 21875.80 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.35
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MASATFSFCP LSQSHPHSSL IKPTPFLRYG KKLHHLHHHI FITISYPSHH SRYLAVSRDD AATPLSSSDQ TQETETKEVE DTIEKRRMEE KFAVLNTGIY
101: ECRSCGYKYD ESAGDPSYPI PPGFQFDKLP EDWRCPTCGA AQSFFESKMV EIAGFAQNQQ YGLGGNALTS GQKTGLIFGS LLLFFALFLS GYFIQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)