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AT1G54490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : exoribonuclease 4
Curator
Summary (TAIR10)
Involved in the ethylene response. XRN4 does not appear to regulate ethylene signaling via an RNA-INDUCED SILENCING COMPLEX-based RNA silencing mechanism but acts by independent means. Endogenous suppressor of posttranscriptional gene silencing.
Computational
Description (TAIR10)
exoribonuclease 4 (XRN4); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: 5'-3' exoribonuclease 3 (TAIR:AT1G75660.1); Has 1935 Blast hits to 1539 proteins in 314 species: Archae - 0; Bacteria - 132; Metazoa - 355; Fungi - 561; Plants - 185; Viruses - 14; Other Eukaryotes - 688 (source: NCBI BLink).
Protein Annotations
EC:3.1.13.-eggNOG:COG5049eggNOG:KOG2044EMBL:AC005287EMBL:AF286718EMBL:AY064012EMBL:AY091411
EMBL:CP002684EnsemblPlants:AT1G54490EnsemblPlants:AT1G54490.1entrez:841891Gene3D:4.10.60.10GeneID:841891Genevisible:Q9FQ04
GO:GO:0000291GO:GO:0000932GO:GO:0001944GO:GO:0003676GO:GO:0004534GO:GO:0005829GO:GO:0005844
GO:GO:0006397GO:GO:0006402GO:GO:0008270GO:GO:0009826GO:GO:0010286GO:GO:0010494GO:GO:0010587
GO:GO:0031087GO:GO:0040029GO:GO:0051301GO:GO:0070370GO:GO:0090503Gramene:AT1G54490.1hmmpanther:PTHR12341
hmmpanther:PTHR12341:SF30HOGENOM:HOG000205514InterPro:IPR001878InterPro:IPR004859InterPro:IPR027073KEGG:ath:AT1G54490KO:K12619
OMA:CCAEYLRPANTHER:PTHR12341PaxDb:Q9FQ04Pfam:PF00098Pfam:PF03159Pfam:Q9FQ04Pfscan:PS50158
PhylomeDB:Q9FQ04PIR:G96586PRIDE:Q9FQ04PRO:PR:Q9FQ04PROSITE:PS50158ProteinModelPortal:Q9FQ04Proteomes:UP000006548
RefSeq:NP_175851.1SMART:SM00343SMR:Q9FQ04STRING:3702.AT1G54490.1SUPFAM:SSF57756TAIR:AT1G54490tair10-symbols:AIN1
tair10-symbols:ATXRN4tair10-symbols:EIN5tair10-symbols:XRN4UniGene:At.16935UniProt:Q9FQ04
Coordinates (TAIR10) chr1:+:20350300..20356650
Molecular Weight (calculated) 107784.00 Da
IEP (calculated) 6.82
GRAVY (calculated) -0.56
Length 947 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVPAFYRWL ADRYPKSISD VVEEEPTDGG RGDLIPVDIT RPNPNGFEFD NLYLDMNGII HPCFHPEGKP APATYDDVFK SMFEYIDHLF TLVRPRKILY
101: LAIDGVAPRA KMNQQRSRRF RAAKDAAEAE AEEERLRKDF EMEGQILSAK EKAETCDSNV ITPGTPFMAI LSVALQYYIQ SRLNHNPGWR YVKVILSDSN
201: VPGEGEHKIM SYIRLQRNLP GFDPNTRHCL YGLDADLIML SLATHEVHFS ILREVITYPG QQEKCFVCGQ TGHFASDCPG KSGSNNAAAD IPIHKKKYQF
301: LNIWVLREYL QYELAIPDPP FMINFERIID DFVFLCFFVG NDFLPHMPTL EIREGAINLL MHVYRKEFTA MGGYLTDSGE VLLDRVEHFI QAVAVNEDKI
401: FQKRTRIKQS MDNNEEMKQR SRRDPSEVPP EPIDDKIKLG EPGYKERYYA EKFSTTNPEE TEQIKQDMVL KYVEGLCWVC RYYYQGVCSW QWFYPYHYAP
501: FASDLKNLPD LEITFFIGEP FKPFDQLMGT LPAASSNALP GEYRKLMTDP SSPILKFYPA DFELDMNGKR FAWQGIAKLP FIEEKLLLAA TRKLEETLTV
601: EEQQRNSVML DLLYVHPAHP LGQRILQYYH FYQHMPPHEC LPWMIDPNSS QGMNGFLWFS ERNGFQTRVD SPVNGLPCIE QNRALNVTYL CPAKHSHISE
701: PPRGAIIPDK ILTSVDIKPF PPLWHEDNSN RRRQARDRPQ VVGAIAGPSL GEAAHRLIKN TLNMKSSTGA ASGLIDPNGY YRNVPGNYSY GGVNRPRAPG
801: PSPYRKAYDD DSSYYYGKYN NSTQGTFNNG PRYPYPSNGS QDYNRNYNSK IVAEQHNRGG LGAGMSGLSI EDNGRSKQLY SSYTEAANAN LNPLPSPPTQ
901: WIGTQPGGNF VGGYYRDGVG YSETNGKSVK KVIYQAKTQP SHRGANL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)