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AT1G54470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.928
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Encodes a Cf-like gene in Arabidopsis that confers downy mildew resistance to several isolates of Peronospora parasitica.
Computational
Description (TAIR10)
resistance to Peronospora parasitica 27 (RPP27); LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 14 (TAIR:AT1G74180.1); Has 60601 Blast hits to 25411 proteins in 1007 species: Archae - 24; Bacteria - 5968; Metazoa - 12526; Fungi - 867; Plants - 37950; Viruses - 57; Other Eukaryotes - 3209 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:CP002684EnsemblPlants:AT1G54470
EnsemblPlants:AT1G54470.1entrez:841889Gene3D:3.80.10.10GeneID:841889
GO:GO:0016021Gramene:AT1G54470.1hmmpanther:PTHR27004hmmpanther:PTHR27004:SF29
InterPro:IPR001611InterPro:IPR013210InterPro:IPR032675OMA:CEWERVE
PaxDb:Q3ECQ0Pfam:PF00560Pfam:PF08263Pfscan:PS51450
PhylomeDB:Q3ECQ0PRIDE:Q3ECQ0PROSITE:PS51450ProteinModelPortal:Q3ECQ0
Proteomes:UP000006548RefSeq:NP_175849.2SMR:Q3ECQ0STRING:3702.AT1G54470.2
SUPFAM:SSF52058TAIR:AT1G54470tair10-symbols:RPP27TMHMM:TMhelix
UniGene:At.70596UniProt:Q3ECQ0
Coordinates (TAIR10) chr1:+:20344738..20347339
Molecular Weight (calculated) 51661.10 Da
IEP (calculated) 8.25
GRAVY (calculated) 0.03
Length 457 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTNFVILLL LLCVFAISPS QQEEINQHNP GIYHQKLLYK VQQWRTSLKE SNSVELKLSL AAIVAGVLYF LAALISSACG IGSGGLFIPI TTLVSRLDLK
101: TGKRFLGQYL IWVILLLGQL HECKSCIEKE RVALLDFKKY WMSITQESDL DYVFPTWNND TKSDCCQWES IMCNPTSGRL IRLHVGASNL KENSLLNISL
201: LHPFEEVRSL ELSAGLNGFV DNVEGYKSLR KLKNLEILDL SYNNRFNNNI LPFINAATSL TSLSLQNNSM EGPFPFEEIK DLTNLKLLDL SRNILKGPMQ
301: GLTHLKKLKA LDLSNNVFSS IMELQVVCEM KNLWELDLRE NKFVGQLPLC LGRLNKLRVL DLSSNQLNGN LPSTFNRLES LEYLSLLDNN FTGFFSFDPL
401: ANLTKLKVFK LSSTSDMLQI KTESEPKYQF QLSVVVIRVC SLEKIPSFLV VGKQSGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)