AT1G54460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TPX2 (targeting protein for Xklp2) protein family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: WVD2-like 1 (TAIR:AT3G04630.3); Has 583 Blast hits to 565 proteins in 94 species: Archae - 0; Bacteria - 3; Metazoa - 163; Fungi - 46; Plants - 315; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20340907..20342900 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37400.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.29 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.14 | ||||||||||||||||||||||||||||||||
| Length | 338 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRELVDKHM DKKANSLTAS STGSSDDNKV PSPSTNEAAE VKECTEQNLV ADDARLRQQG ITETPGSHKS SVKPRVTAKT TVPKPFSLSA EKPRRAAVDN 101: NSLGNGASHN SSSASRVSQL NSPLPTRRIP DHKMHHDEED SFSVASSSAT SIRSFKPKIT IGVAPTFSST SRLERRREFY QKLEEKQKAL EAEKRENEKR 201: LKEEQEAVTK QLRKNMAYKA NPVPSFYQEG PPPKQPLKKF PLTRPKSPNL NRRKSCSDTV NASYQEVKGK HCARHRHSVG GCKDEVKTNS VPRTPNSSSK 301: DQMRKSKKGT PKSEEVHEMF NSGHDGETGE NGVGVVEE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)