AT1G54440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (TAIR:AT5G35910.1); Has 4852 Blast hits to 4794 proteins in 1324 species: Archae - 0; Bacteria - 2587; Metazoa - 382; Fungi - 243; Plants - 209; Viruses - 1; Other Eukaryotes - 1430 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20323284..20327931 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73486.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 637 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRFDDPMDEF KRNRKMEEDS KKVIDVKVAE SDKGFAKFGK AEVPFHIPTL TKPQEEYKIL VDNANNPFEH VLLEKSEDGL RFIHPLEELS VMDFVDRNLS 101: EMRPVKPLPL EETPFKLVEE VKDLEDLAAA LQSVEEFAVD LEHNQYRTFQ GLTCLMQIST RTEDYIVDIF KLWDHIGPYL RELFKDPKKK KVIHGADRDI 201: IWLQRDFGIY VCNLFDTGQA SRVLKLERNS LEFLLKHYCG VAANKEYQKA DWRIRPLPDV MKRYAREDTH YLLYIYDVMR MELHTMAKED EQSDSPLVEV 301: YKRSYDVCMQ LYEKELWTRD SYLHVYGVQT GNLNAVQLSI VAGLCEWRDR IARADDESTG YVLPNKTLFD IAKEMPIVVA QLRRLLKSKL PYLERNFDAV 401: ISVIRRSMQN AAAFEPVVQS LKDRRPETVV EMNIEPKIEK TDTGASASSL SLEKVCVDDS KKQSSGFGVL PLKRKLESDK TVVEKNIEPK IEKTGTEASA 501: SSLSSKKVCV DDSKKQSSGF GVLLSKRKFE SDNKVKEEVK VSKSKPDKVI IVVDDDDDDD DDESYEQSTK AADALDRVSE TPSKGSPSLT QKPKTCNTEV 601: IVLDDDDDSE SREDEDMRRR SEKHRRFMNM KRGFLNI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)