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AT1G54410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : dehydrin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
dehydrin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water, response to stress; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 604 Blast hits to 498 proteins in 128 species: Archae - 0; Bacteria - 12; Metazoa - 151; Fungi - 65; Plants - 159; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JU0PeggNOG:ENOG41107BPEMBL:AC005287EMBL:AF083768EMBL:AF325000EMBL:AK230245EMBL:AY070750
EMBL:AY084428EMBL:AY097376EMBL:CP002684EnsemblPlants:AT1G54410EnsemblPlants:AT1G54410.1entrez:841883GeneID:841883
Genevisible:Q9SLJ2GO:GO:0005634GO:GO:0005829GO:GO:0009507GO:GO:0010730GO:GO:0046872Gramene:AT1G54410.1
hmmpanther:PTHR34941InParanoid:Q9SLJ2KEGG:ath:AT1G54410OMA:KKDGEHKPaxDb:Q9SLJ2PIR:H96585PRIDE:Q9SLJ2
ProteinModelPortal:Q9SLJ2Proteomes:UP000006548RefSeq:NP_175843.1STRING:3702.AT1G54410.1TAIR:AT1G54410UniGene:At.24854UniGene:At.75559
UniProt:Q9SLJ2
Coordinates (TAIR10) chr1:-:20310305..20310601
Molecular Weight (calculated) 10796.30 Da
IEP (calculated) 7.23
GRAVY (calculated) -1.87
Length 98 amino acids
Sequence (TAIR10)
(BLAST)
1: MAGLINKIGD ALHIGGGNKE GEHKKEEEHK KHVDEHKSGE HKEGIVDKIK DKIHGGEGKS HDGEGKSHDG EKKKKKDKKE KKHHDDGHHS SSSDSDSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)