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AT1G54340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

onion epidermal cell layer (peroxisomal marker)

At1g-GFP-54340
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : isocitrate dehydrogenase
Curator
Summary (TAIR10)
NADP-specific isocitrate dehydrogenase (ICDH)
Computational
Description (TAIR10)
isocitrate dehydrogenase (ICDH); FUNCTIONS IN: NAD or NADH binding, isocitrate dehydrogenase (NADP+) activity, magnesium ion binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; INVOLVED IN: oxidation reduction, isocitrate metabolic process, metabolic process; LOCATED IN: peroxisome, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NADP-dependent, eukaryotic (InterPro:IPR004790), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: cytosolic NADP+-dependent isocitrate dehydrogenase (TAIR:AT1G65930.1); Has 5270 Blast hits to 5245 proteins in 1162 species: Archae - 45; Bacteria - 1280; Metazoa - 777; Fungi - 225; Plants - 439; Viruses - 0; Other Eukaryotes - 2504 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G54340-MONOMERBioGrid:27100EC:1.1.1.42eggNOG:COG0538eggNOG:KOG1526EMBL:AC005287EMBL:AF316501
EMBL:BT025983EMBL:CP002684EnsemblPlants:AT1G54340EnsemblPlants:AT1G54340.1entrez:841875Gene3D:3.40.718.10GeneID:841875
Genevisible:Q9SLK0GO:GO:0000287GO:GO:0004450GO:GO:0005777GO:GO:0005886GO:GO:0006099GO:GO:0006102
GO:GO:0051287Gramene:AT1G54340.1gramene_pathway:1.1.1.42gramene_pathway:PWY-6549hmmpanther:PTHR11822HOGENOM:HOG000019858InParanoid:Q9SLK0
InterPro:IPR004790InterPro:IPR019818InterPro:IPR024084iPTMnet:Q9SLK0KEGG:00020+1.1.1.42KEGG:00480+1.1.1.42KEGG:00720+1.1.1.42
KEGG:ath:AT1G54340KO:K00031OMA:EANWRSKPANTHER:PTHR11822PaxDb:Q9SLK0Pfam:PF00180Pfam:Q9SLK0
PhylomeDB:Q9SLK0PIR:A96585PIRSF:PIRSF000108PRIDE:Q9SLK0PRO:PR:Q9SLK0PROSITE:PS00470ProteinModelPortal:Q9SLK0
Proteomes:UP000006548Reactome:R-ATH-389542Reactome:R-ATH-71403RefSeq:NP_175836.1scanprosite:PS00470SMART:SM01329SMR:Q9SLK0
STRING:3702.AT1G54340.1SUPFAM:SSF53659TAIR:AT1G54340tair10-symbols:ICDHTIGRfam:TIGR00127TIGRFAMs:TIGR00127UniGene:At.11811
UniGene:At.37230UniProt:Q9SLK0
Coordinates (TAIR10) chr1:+:20283520..20286506
Molecular Weight (calculated) 47236.60 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.30
Length 416 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFEKIKVIN PVVEMDGDEM TRVIWKFIKD KLIFPFLELD IKYFDLGLPN RDFTDDKVTI ETAEATLKYN VAIKCATITP DEARVREFGL KKMWRSPNGT
101: IRNILNGTVF REPIICRNIP RLVPGWTKPI CIGRHAFGDQ YRATDLIVNE PGKLKLVFEP SGSSQKTEFE VFNFTGGGVA LAMYNTDESI RAFAESSMYT
201: AYQKKWPLYL STKNTILKIY DGRFKDIFQE VYEANWRSKY EAAGIWYEHR LIDDMVAYAM KSEGGYVWAC KNYDGDVQSD FLAQGYGSLG MMTSVLVCPD
301: GKTIEAEAAH GTVTRHYRVH QKGGETSTNS IASIFAWSRG LAHRAKLDSN AALLSYTEKL EAACMGTVES GKMTKDLALL IHGAKVRRDQ YVNTEEFIDA
401: VAWELKRRLL GNNSRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)