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AT1G54330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : NAC domain containing protein 20
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 20 (NAC020); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 28 (TAIR:AT1G65910.1); Has 3060 Blast hits to 3052 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3060; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IETMeggNOG:ENOG4111840EMBL:AK176278EMBL:CP002684
EnsemblPlants:AT1G54330EnsemblPlants:AT1G54330.1entrez:841874GeneID:841874
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0044212
Gramene:AT1G54330.1hmmpanther:PTHR31989hmmpanther:PTHR31989:SF9HOGENOM:HOG000237406
IntAct:Q67Z40InterPro:IPR003441KEGG:ath:AT1G54330OMA:HEYRLTH
Pfam:PF02365Pfscan:PS51005PhylomeDB:Q67Z40PROSITE:PS51005
Proteomes:UP000006548RefSeq:NP_175835.2SMR:Q67Z40STRING:3702.AT1G54330.1
SUPFAM:SSF101941TAIR:AT1G54330tair10-symbols:ANAC020tair10-symbols:NAC020
UniGene:At.37235UniProt:Q67Z40
Coordinates (TAIR10) chr1:-:20279715..20280889
Molecular Weight (calculated) 34770.70 Da
IEP (calculated) 5.47
GRAVY (calculated) -0.83
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPMSLPPGF RFHPTDEELV AYYLDRKVNG QAIELEIIPE VDLYKCEPWD LPEKSFLPGN DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRTVES
101: KKMKMGMKKT LVYYRGRAPH GLRTNWVMHE YRLTHAPSSS LKESYALCRV FKKNIQIPKR KGEEEEAEEE STSVGKEEEE EKEKKWRKCD GNYIEDESLK
201: RASAETSSSE LTQGVLLDEA NSSSIFALHF SSSLLDDHDH LFSNYSHQLP YHPPLQLQDF PQLSMNEAEI MSIQQDFQCR DSMNGTLDEI FSSSATFPAS
301: L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)