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AT1G54320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 1 (TAIR:AT3G12740.1); Has 852 Blast hits to 849 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 222; Plants - 160; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
Protein Annotations
BioGrid:27098eggNOG:COG5035eggNOG:KOG2952EMBL:AC005287EMBL:AF446869EMBL:AY045672EMBL:AY053406
EMBL:CP002684EnsemblPlants:AT1G54320EnsemblPlants:AT1G54320.1entrez:841873GeneID:841873Genevisible:Q9SLK2GO:GO:0000139
GO:GO:0005789GO:GO:0016021GO:GO:0031902Gramene:AT1G54320.1hmmpanther:PTHR10926hmmpanther:PTHR10926:SF30HOGENOM:HOG000209056
InParanoid:Q9SLK2IntAct:Q9SLK2InterPro:IPR005045KEGG:ath:AT1G54320OMA:RNDRDAMPANTHER:PTHR10926PaxDb:Q9SLK2
Pfam:PF03381Pfam:Q9SLK2PhylomeDB:Q9SLK2PIR:G96584PIRSF:PIRSF015840PRIDE:Q9SLK2PRO:PR:Q9SLK2
Proteomes:UP000006548RefSeq:NP_564656.1STRING:3702.AT1G54320.1SwissPalm:Q9SLK2TAIR:AT1G54320TMHMM:TMhelixUniGene:At.11809
UniGene:At.66841UniProt:Q9SLK2
Coordinates (TAIR10) chr1:-:20275732..20277793
Molecular Weight (calculated) 38956.80 Da
IEP (calculated) 10.01
GRAVY (calculated) -0.34
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSNTASSSA GAAGSGDSSA ARKNSKRPKY SKFTQQELPA CKPILTPGWV ISTFLIVSVI FIPLGVISLF ASQDVVEIVD RYDTECIPAP ARTNKVAYIQ
101: GDGDKVCNRD LKVTKRMKQP IYVYYQLENF YQNHRRYVKS RSDSQLRSTK YENQISACKP EDDVGGQPIV PCGLIAWSLF NDTYALSRNN VSLAVNKKGI
201: AWKSDKEHKF GNKVFPKNFQ KGNITGGATL DPRIPLSEQE DLIVWMRTAA LPTFRKLYGK IESDLEMGDT IHVKLNNNYN TYSFNGKKKL VLSTTSWLGG
301: KNDFLGIAYL TVGGICFILA LAFTIMYLVK PRRLGDPSYL SWNRNPGGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)