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AT1G54310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.984
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: RNA binding; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478); Has 2033 Blast hits to 2033 proteins in 959 species: Archae - 30; Bacteria - 1845; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1092eggNOG:ENOG410IH1GEMBL:AF361636EMBL:AY059153EMBL:CP002684EnsemblPlants:AT1G54310EnsemblPlants:AT1G54310.1
entrez:841872ExpressionAtlas:Q9ASW2Gene3D:2.30.130.10GeneID:841872GO:GO:0003723Gramene:AT1G54310.1hmmpanther:PTHR11061
hmmpanther:PTHR11061:SF12InterPro:IPR002478InterPro:IPR015947InterPro:IPR029063KEGG:ath:AT1G54310PhylomeDB:Q9ASW2Proteomes:UP000006548
RefSeq:NP_564655.1SMART:SM00359SMR:Q9ASW2STRING:3702.AT1G54310.2SUPFAM:SSF53335SUPFAM:SSF88697TAIR:AT1G54310
UniGene:At.11809UniGene:At.66841UniProt:Q9ASW2
Coordinates (TAIR10) chr1:+:20273618..20274678
Molecular Weight (calculated) 27109.00 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.04
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMLGVLQLP CRLHHSLFYS SSQIASSRPQ GVAKVVLKKG KTQLFKDGSP MVYSGAVDRI IGKPPPQTGD VVIVADGTEN PIGWGLYNSV SMFCVRLMQL
101: QHESTRDPSC ALNIEKLLQT RIAEAVQLRK SLALPSANTN AYRLVNSEGD RLSGLIVDVF GDIAVVASSA AWLEKYRIEV ESCLRSIDGI NHINWRPSLD
201: VLKEDGFDIS SLKQTQSSTL PQRSMVRCVV PLIRLWKMGS HTQFR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)