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AT1G54270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18433157 (2008): cytosol
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : eif4a-2
Curator
Summary (TAIR10)
member of eIF4A - eukaryotic initiation factor 4A
Computational
Description (TAIR10)
eif4a-2 (EIF4A-2); FUNCTIONS IN: ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4A1 (TAIR:AT3G13920.1); Has 47858 Blast hits to 47246 proteins in 3099 species: Archae - 743; Bacteria - 25967; Metazoa - 6043; Fungi - 4764; Plants - 2602; Viruses - 17; Other Eukaryotes - 7722 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2506-MONOMERBioCyc:ARA:GQT-2507-MONOMERBioGrid:27093EC:3.6.4.13eggNOG:COG0513eggNOG:KOG0327EMBL:AC005287
EMBL:AF386923EMBL:AF428462EMBL:AK226344EMBL:AY087965EMBL:BT008504EMBL:CP002684EMBL:X65053
EnsemblPlants:AT1G54270EnsemblPlants:AT1G54270.1entrez:841868ExpressionAtlas:P41377Gene3D:3.40.50.300GeneID:841868Genevisible:P41377
GO:GO:0003743GO:GO:0004004GO:GO:0005524GO:GO:0005774GO:GO:0005829GO:GO:0005886GO:GO:0006413
GO:GO:0009506GO:GO:0010468GO:GO:0010501GO:GO:0046686hmmpanther:PTHR24031hmmpanther:PTHR24031:SF294HOGENOM:HOG000268797
InParanoid:P41377IntAct:P41377InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014
InterPro:IPR027417iPTMnet:P41377OMA:FMNITCHPaxDb:P41377Pfam:P41377Pfam:PF00270Pfam:PF00271
Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:P41377PIR:JC1453PRIDE:P41377PRO:PR:P41377
PROSITE:PS00039PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:P41377Proteomes:UP000006548RefSeq:NP_175829.1
scanprosite:PS00039SMART:SM00487SMART:SM00490SMR:P41377STRING:3702.AT1G54270.1SUPFAM:SSF52540SwissPalm:P41377
TAIR:AT1G54270tair10-symbols:EIF4A-2UniGene:At.195UniProt:P41377
Coordinates (TAIR10) chr1:+:20260495..20262018
Molecular Weight (calculated) 46765.30 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.22
Length 412 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)