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AT1G54250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA polymerase Rpb8
Curator
Summary (TAIR10)
One of two highly similar proteins that can serve as non-catalytic subunits of Nuclear RNA polymerases II and V; homologous to budding yeast RPB8. Probably redundant with At3g59600.
Computational
Description (TAIR10)
NRPB8A; FUNCTIONS IN: DNA-directed RNA polymerase activity; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), RNA polymerase, Rpb8 (InterPro:IPR005570); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb8 (TAIR:AT3G59600.1); Has 513 Blast hits to 511 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 205; Plants - 84; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Protein Annotations
BioGrid:27091eggNOG:ENOG4111FT0eggNOG:KOG3400EMBL:AC005287
EMBL:AF017074EMBL:AK227855EMBL:AY086894EMBL:BT004791
EMBL:CP002684EnsemblPlants:AT1G54250EnsemblPlants:AT1G54250.1entrez:841866
Gene3D:2.40.50.140GeneID:841866Genevisible:O81097GO:GO:0000419
GO:GO:0005665GO:GO:0005666GO:GO:0005736GO:GO:0006360
GO:GO:0006366GO:GO:0006383Gramene:AT1G54250.1hmmpanther:PTHR10917
HOGENOM:HOG000175572InParanoid:O81097IntAct:O81097InterPro:IPR005570
InterPro:IPR012340KEGG:ath:AT1G54250KO:K03016OMA:YVCHGKI
PANTHER:PTHR10917PaxDb:O81097Pfam:O81097Pfam:PF03870
PhylomeDB:O81097PIR:T52270PIRSF:PIRSF000779PRIDE:O81097
PRO:PR:O81097ProteinModelPortal:O81097Proteomes:UP000006548Reactome:R-ATH-112382
Reactome:R-ATH-113418Reactome:R-ATH-1834949Reactome:R-ATH-674695Reactome:R-ATH-6781823
Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-72086Reactome:R-ATH-72163
Reactome:R-ATH-72165Reactome:R-ATH-72203Reactome:R-ATH-73776Reactome:R-ATH-73779
Reactome:R-ATH-75953Reactome:R-ATH-76042Reactome:R-ATH-77075RefSeq:NP_175827.1
SMART:SM00658SMR:O81097STRING:3702.AT1G54250.1SUPFAM:SSF50249
TAIR:AT1G54250tair10-symbols:ATRPABC16.5tair10-symbols:NRPB8Atair10-symbols:NRPE8A
UniGene:At.21061UniProt:O81097
Coordinates (TAIR10) chr1:+:20255210..20256335
Molecular Weight (calculated) 16512.10 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.14
Length 146 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNIILFED IFVVDQLDPD GKKFDKVTRV QATSHNLEMF MHLDVNTEVY PLAVGDKFTL ALAPTLNLDG TPDTGYFTPG AKKTLADKYE YIMHGKLYKI
101: SERDGKTPKA ELYVSFGGLL MLLKGDPAHI SHFELDQRLF LLMRKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)