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AT1G54210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.953
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AUTOPHAGY 12 A (ATG12A); INVOLVED IN: autophagy, protein ubiquitination involved in ubiquitin-dependent protein catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 12 (InterPro:IPR007242); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G13970.1); Has 304 Blast hits to 304 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 124; Plants - 58; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
DNASU:841861eggNOG:ENOG4111ND7eggNOG:KOG3439EMBL:AB073184EMBL:AC005287EMBL:AF492758EMBL:BT024654
EMBL:CP002684EnsemblPlants:AT1G54210EnsemblPlants:AT1G54210.1entrez:841861ExpressionAtlas:Q8S924GeneID:841861Genevisible:Q8S924
GO:GO:0000045GO:GO:0000422GO:GO:0006501GO:GO:0006914GO:GO:0015031GO:GO:0019776GO:GO:0034045
GO:GO:0034274GO:GO:0044804hmmpanther:PTHR13385HOGENOM:HOG000234863InParanoid:Q8S924IntAct:Q8S924InterPro:IPR007242
InterPro:IPR029071MINT:MINT-8414488OMA:KKKWAVDPANTHER:PTHR13385PaxDb:Q8S924Pfam:PF04110Pfam:Q8S924
PhylomeDB:Q8S924PRIDE:Q8S924PRO:PR:Q8S924ProteinModelPortal:Q8S924Proteomes:UP000006548Reactome:R-ATH-1632852RefSeq:NP_175823.1
SMR:Q8S924STRING:3702.AT1G54210.1SUPFAM:SSF54236TAIR:AT1G54210tair10-symbols:APG12tair10-symbols:ATATG12tair10-symbols:ATG12A
UniGene:At.43297UniProt:Q8S924
Coordinates (TAIR10) chr1:+:20241278..20242020
Molecular Weight (calculated) 10571.60 Da
IEP (calculated) 9.61
GRAVY (calculated) -0.06
Length 96 amino acids
Sequence (TAIR10)
(BLAST)
1: MATESSSPSS VRKVVVHLRA TGGAPILKQS KFKIPGTDKF AKVIDFLRRQ LHSDSLFVYV NSAFSPNPDE SVIDLYNNFG FDGKLVVNYA CSMAWG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)