AT1G54115.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.839 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cation calcium exchanger 4 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Involved in cation (Na and K) homeostasis. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cation calcium exchanger 4 (CCX4); FUNCTIONS IN: cation:cation antiporter activity; INVOLVED IN: cation transport, cellular cation homeostasis; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: cation exchanger 9 (TAIR:AT3G14070.1); Has 4016 Blast hits to 3229 proteins in 801 species: Archae - 54; Bacteria - 848; Metazoa - 1841; Fungi - 309; Plants - 226; Viruses - 0; Other Eukaryotes - 738 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20202118..20204052 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70805.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.49 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.43 | ||||||||||||||||||||||||||||||||||||||||
| Length | 644 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRAVNFMYSS NNPKFRGIFN GLCAIILFIF FFDQSDIYRN PLLKNLSFVD SSGKFNRGFS QFTVPRRHLS EVDTNGSSGN SSLSGDSTVS CSGLHEHRGY 101: ADQCEFLKSN PICSPDGFFD YLKFFYCSCR DFKILGYILL GVWLVALFYL LGNTAADYFC CSLEKLSKLL RLPPTVAGVT LLPLGNGAPD VFASIAAFVG 201: SDKGEVGLNS VLGGAVFVTC VVVGIVSLCV ADKEVKIDKK CFIRDLSFFL FTLVALMVIL MVGKVTVGIA IAFVSIYVFY ASLVAANEIL RKHSRRLKLD 301: SITPLLPMQG SVFSSPSVEE DIPMYSPLME LDTGEGPPRL HDSLPQWMWA TNVAIYSNHF AKANVHDEER PPWGWTEDGA EVESSLCSKI TSLLETPLTV 401: PRRLTIPLIE EDSWSKTYAV ASVSLAPVLL SFLWSSQDDT SLQARIVAYF IGIAIGSTLG YLAFKNTEPD RPPQIYLIPW VLGGFIMSIV WFYMIANELV 501: ALLVTFGGIY GINPSILGLT VLAWGNSMGD LVSNIALSMN GGDGVQIALS GCYAGPMFNT LVGLGMSMFL GAWSKSPETY MIPEDNSLFY TLGFLIFGLI 601: WSLVMLPRNE MRPNKVMGIG LITLYLIFVT FRLSSAMGFI PWAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)