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AT1G54040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.979
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:20061580 (2010): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : epithiospecifier protein
Curator
Summary (TAIR10)
Epithiospecifier protein, interacts with WRKY53. Involved in pathogen resistance and leaf senescence.
Computational
Description (TAIR10)
epithiospecifier protein (ESP); FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: response to jasmonic acid stimulus, glucosinolate catabolic process, leaf senescence, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: nitrile specifier protein 1 (TAIR:AT3G16400.2); Has 5483 Blast hits to 3741 proteins in 298 species: Archae - 4; Bacteria - 264; Metazoa - 3381; Fungi - 416; Plants - 905; Viruses - 2; Other Eukaryotes - 511 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G54040EnsemblPlants:AT1G54040.1entrez:841842gramene_pathway:2.7.7.-gramene_pathway:PWY-5267hmmpanther:PTHR23244hmmpanther:PTHR23244:SF276
Pfam:PF01344Pfam:PF13964SUPFAM:0047741tair10-symbols:ESPtair10-symbols:ESRtair10-symbols:TASTY
Coordinates (TAIR10) chr1:-:20170995..20171780
Molecular Weight (calculated) 28527.20 Da
IEP (calculated) 4.87
GRAVY (calculated) -0.38
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAVGTKIYI FGGRDENRNF ENFRSYDTVT SEWTFLTKLD EVGGPEARTF HSMASDENHV YVFGGVSKGG TMNTPTRFRT IEAYNIADGK WAQLPDPGDN
101: FEKRGGAGFA VVQGKIWVVY GFATSIVPGG KDDYESNAVQ FYDPASKKWT EVETTGAKPS ARSVFAHAVV GKYIIIFAGE VWPDLNGHYG PGTLSNEGYA
201: LDTETLVWEK LGEEGAPAIP RGWTAYTAAT VDGKNGLLMH GGKLPTNERT DDLYFYAVNS A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)