suba logo
AT1G54030.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23155454 (2012): endoplasmic reticulum
  • PMID:23155454 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:20626647 (2010): endoplasmic reticulum endoplasmic reticulum lumen
  • PMID:20626647 (2010): plant-type vacuole plant-type vacuole membrane
  • PMID:19880612 (2010): endoplasmic reticulum
  • PMID:19880612 (2010): plant-type vacuole plant-type vacuole membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MODIFIED VACUOLE PHENOTYPE 1 (MVP1); FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: intracellular protein transport; LOCATED IN: plant-type vacuole membrane, endoplasmic reticulum, vacuole, ER body; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G54010.1); Has 3257 Blast hits to 3227 proteins in 154 species: Archae - 0; Bacteria - 207; Metazoa - 0; Fungi - 19; Plants - 3013; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G54030-MONOMERBioGrid:27066eggNOG:ENOG410JSF6eggNOG:ENOG41108V6EMBL:AC006577EMBL:AY087988EMBL:BT010163
EMBL:CP002684EnsemblPlants:AT1G54030EnsemblPlants:AT1G54030.1entrez:841841Gene3D:3.40.50.1110GeneID:841841Genevisible:Q7XA74
GO:GO:0005773GO:GO:0005783GO:GO:0006886GO:GO:0007029GO:GO:0009506GO:GO:0009705GO:GO:0010168
GO:GO:0016788GO:GO:0032527Gramene:AT1G54030.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF262HOGENOM:HOG000237649InParanoid:Q7XA74
IntAct:Q7XA74InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT1G54030OMA:HLMWGADPaxDb:Q7XA74Pfam:PF00657
Pfam:Q7XA74PhylomeDB:Q7XA74PIR:H96580PRIDE:Q7XA74PRO:PR:Q7XA74ProteinModelPortal:Q7XA74Proteomes:UP000006548
RefSeq:NP_175805.1STRING:3702.AT1G54030.1TAIR:AT1G54030tair10-symbols:MVP1UniGene:At.46834UniProt:Q7XA74
Coordinates (TAIR10) chr1:+:20167685..20169476
Molecular Weight (calculated) 46085.30 Da
IEP (calculated) 6.71
GRAVY (calculated) -0.06
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLIPSFTAN SNEPPPSKLS LSDLSMAILK SHFFLLFPLL LLHFHTVSFA QTLFVFGDGL YDAGNKQFLS QNRVDASFPP YGVTVGQATG RWSDGSIVPD
101: YLAKFMGIPK ISPILLTTAD FSHGANFAIA DATVLGSPPE TMTLSQQVKK FSENKNKWTN QTRSEAIYLI YIGSDDYLSY AKSNPSPSDT QKQAFVDQVI
201: TTIKAEIKVV YGSGGRKFAF QNLAPLGCLP AVKQASGNVQ ECVKLPSEMA ALHNKKLLQL LVELSRELNG FQYSFYDFFS SIQNRVIKSK TYTFETGNAA
301: CCGTGSINGS NCSAKNVCAK PEEYIFFDGK HLTQEANLQV GHLMWGADPE VIGPNNIREL MVLPLDITVI LAGIQEAMAA MRPRQSNIES LYDIKKMESE
401: MDNHWLYQVD KAISFMI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)