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AT1G54010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 17151019
AmiGO : vacuole 15215502
AmiGO : vacuole 15539469
SwissProt : extracellular 16381842
TAIR : vacuole 15539469
TAIR : plasma membrane 17151019
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16356755 (2006): extracellular region
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G54000.1); Has 3090 Blast hits to 3062 proteins in 114 species: Archae - 0; Bacteria - 139; Metazoa - 0; Fungi - 0; Plants - 2943; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G54010-MONOMERBioGrid:27064eggNOG:ENOG410JVXTeggNOG:ENOG41105GEEMBL:AC006577EMBL:AY062552EMBL:AY084258
EMBL:AY093330EMBL:CP002684EnsemblPlants:AT1G54010EnsemblPlants:AT1G54010.1entrez:841839Gene3D:3.40.50.1110GeneID:841839
Genevisible:Q8W4H8GO:GO:0005773GO:GO:0005774GO:GO:0005783GO:GO:0009506GO:GO:0016020GO:GO:0016788
Gramene:AT1G54010.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF266HOGENOM:HOG000237649InParanoid:Q8W4H8IntAct:Q8W4H8InterPro:IPR001087
InterPro:IPR013830KEGG:ath:AT1G54010OMA:HSRLCEYPaxDb:Q8W4H8Pfam:PF00657Pfam:Q8W4H8PhylomeDB:Q8W4H8
PIR:F96580PRIDE:Q8W4H8PRO:PR:Q8W4H8ProteinModelPortal:Q8W4H8Proteomes:UP000006548RefSeq:NP_564647.1STRING:3702.AT1G54010.1
SUPFAM:SSF52266TAIR:AT1G54010TMHMM:TMhelixUniGene:At.19864UniProt:Q8W4H8
Coordinates (TAIR10) chr1:-:20158854..20160747
Molecular Weight (calculated) 43145.60 Da
IEP (calculated) 8.19
GRAVY (calculated) -0.18
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MMAKNCNLVS VLCVFLVLTL FNKPITVAGQ NIPAVGLFTF GDSNFDAGNK QTLTKTLLPQ TFWPYGKSRD DPNGKFSDGL IAPDFLAKFM RIPIVIPPAL
101: QPNVNVSRGA SFAVADATLL GAPVESLTLN QQVRKFNQMK AANWNDDFVK KSVFMIYIGA NDYLNFTKNN PNADASTQQA FVTSVTNKLK NDISLLYSSG
201: ASKFVIQTLA PLGCLPIVRQ EFNTGMDQCY EKLNDLAKQH NEKIGPMLNE LARTAPASAP FQFTVFDFYN AILTRTQRNQ NFRFFVTNAS CCGVGTHDAY
301: GCGFPNVHSR LCEYQRSYLF FDGRHNTEKA QEMFGHLLFG ADTNVIQPMN IRELVVYPAD EPMRESWVPP TSATVQLRES RGYEYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)