AT1G53990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GDSL-motif lipase 3 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Contains lipase signature motif and GDSL domain. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GDSL-motif lipase 3 (GLIP3); FUNCTIONS IN: lipase activity, carboxylesterase activity; INVOLVED IN: glycerol biosynthetic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL lipase 1 (TAIR:AT5G40990.1); Has 3198 Blast hits to 3161 proteins in 128 species: Archae - 0; Bacteria - 127; Metazoa - 0; Fungi - 51; Plants - 3003; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20151016..20152752 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41112.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.21 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 367 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVRLVLIIFF VYTIILSIGS INCIDNNNLV TNQAALFVFG DSLFDAGNNN YINTVSSFRS NIWPYGQTNF KFPTGRLSDG PEKAWLPSIP PNLQPNNGNN 101: QFTYGVSFAS AGAGALAESF LGMVINLGTQ LNNFKDVEKS LRSELGDAET KRVFSRAVYL FHIGANDYFY PFSANSSTFK SNSKEKFVDF VIGNITFVIE 201: EVYKMGGRKF GFLNVGPYEC SPNSLIRDRT KIGSCFKPVA ELIDMHNKKF PDVLRRLQRQ LSGFRYALHD YHTSLSERIN SPSKYGFKEG KKACCGSGPL 301: RGINTCGNRI GPSQGYGLCE NVTDYLFYDS SHLTEKAHRQ IAELIWNGPP NVTRPYNLKA LFELRLT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)