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AT1G53950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.988
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin family protein (TAIR:AT4G02890.4); Has 10458 Blast hits to 4586 proteins in 685 species: Archae - 0; Bacteria - 26; Metazoa - 4341; Fungi - 1141; Plants - 2617; Viruses - 325; Other Eukaryotes - 2008 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5272eggNOG:KOG0001EMBL:CP002684EnsemblPlants:AT1G53950EnsemblPlants:AT1G53950.1entrez:841834GeneID:841834
Gramene:AT1G53950.1hmmpanther:PTHR10666InParanoid:F4HTF5InterPro:IPR000626InterPro:IPR019956InterPro:IPR029071KEGG:ath:AT1G53950
OMA:TIDLRIHPaxDb:F4HTF5Pfam:PF00240Pfscan:PS50053PRIDE:F4HTF5PRINTS:PR00348PROSITE:PS50053
ProteinModelPortal:F4HTF5Proteomes:UP000006548RefSeq:NP_175798.1SMART:SM00213SMR:F4HTF5STRING:3702.AT1G53950.1SUPFAM:SSF54236
TAIR:AT1G53950UniGene:At.37305UniProt:F4HTF5
Coordinates (TAIR10) chr1:-:20146448..20147988
Molecular Weight (calculated) 24042.40 Da
IEP (calculated) 8.70
GRAVY (calculated) -0.33
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MHISIKTLEG KRIKLEVEDS SNTIDLKIHG EPTRELVVDL SPTPDTGAIM MIFIKTLTGR TNTYEVKGSD TIRELKAKHE EKEGIPVEQQ RLIFQGRISI
101: KTVKGKSINL EVADSSDTID LKINGEPTRQ LVLRLGPAVL MRIFVSTIKE KTFILEVKGS DTIKKLKSMI HDQGGPPVDQ QDLNHLGTKL KNNATISDYN
201: IKPDANLVIM QNGCIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)