AT1G53950.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.990 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Ubiquitin-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin family protein (TAIR:AT4G02890.4); Has 10458 Blast hits to 4586 proteins in 685 species: Archae - 0; Bacteria - 26; Metazoa - 4341; Fungi - 1141; Plants - 2617; Viruses - 325; Other Eukaryotes - 2008 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:20146448..20147988 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 24042.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.70 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||
| Length | 216 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHISIKTLEG KRIKLEVEDS SNTIDLKIHG EPTRELVVDL SPTPDTGAIM MIFIKTLTGR TNTYEVKGSD TIRELKAKHE EKEGIPVEQQ RLIFQGRISI 101: KTVKGKSINL EVADSSDTID LKINGEPTRQ LVLRLGPAVL MRIFVSTIKE KTFILEVKGS DTIKKLKSMI HDQGGPPVDQ QDLNHLGTKL KNNATISDYN 201: IKPDANLVIM QNGCIC |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)