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AT1G53900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Eukaryotic translation initiation factor 2B (eIF-2B) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic translation initiation factor 2B (eIF-2B) family protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649), Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 2B (eIF-2B) family protein (TAIR:AT1G53880.1); Has 4724 Blast hits to 4722 proteins in 1045 species: Archae - 373; Bacteria - 1754; Metazoa - 521; Fungi - 487; Plants - 467; Viruses - 0; Other Eukaryotes - 1122 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1184eggNOG:KOG1466EMBL:CP002684EnsemblPlants:AT1G53880.1
EnsemblPlants:AT1G53900EnsemblPlants:AT1G53900.1entrez:841825entrez:841828
GeneID:841825GeneID:841828GO:GO:0003743Gramene:AT1G53880.1
Gramene:AT1G53900.1hmmpanther:PTHR10233hmmpanther:PTHR10233:SF18IntAct:F4HTE0
InterPro:IPR000649InterPro:IPR007612InterPro:IPR025659KEGG:00270+5.3.1.23
KEGG:ath:AT1G53880KEGG:ath:AT1G53900KO:K03239ncoils:Coil
OMA:ISCKARTPfam:PF01008Pfam:PF04525PhylomeDB:F4HTE0
Proteomes:UP000006548Reactome:R-ATH-72731RefSeq:NP_564643.2RefSeq:NP_564646.3
SMR:F4HTE0STRING:3702.AT1G53900.1SUPFAM:SSF100950SUPFAM:SSF54518
TAIR:AT1G53880TAIR:AT1G53900UniGene:At.27783unipathway:UPA00904
UniProt:F4HTE0
Coordinates (TAIR10) chr1:+:20127634..20130834
Molecular Weight (calculated) 65139.50 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.17
Length 580 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKIHPDKAF PVDFSVGEGK TSPYLTTEKE SFTIWMRSLV FHSKGCTVFD SKGNLIYRVD NYNSKSCSEV YLMDLYGKIL FTLRQKKLGL FKSWKGYNST
101: GTRFQLRKNF KILPKGSSSS YKVVMGSRIV DGDHQSCYKI VKRKSVFTIE DGSGRLLAEV KKKQSNIKSL DLGKDVLTMM VEPQLETEIF EEFIKMWRES
201: ASFILDKHQN NKPISLTHSI DSPPPPSASM ADENPNPNPI SAYYQTRAAH HGIVTSEWLE QAQAAVRRYP DRDSLVSGRP FSVIEDFNSW RQQPDLAEAV
301: AAIRALAAVI RASEATTMME LEIELKKASD TLKSWDTTSI SLTAGCDLFM RYVTRTSALE FEDFNSAKSR VLERAEKFGE ISCKARTIIA MLSQDFIFDG
401: CTILVHGFSR VVFEILKTSA QNKKLFRVLC TEGRPDKTGV LLANELAKLD IPVKLLIDSA VAYSMDEVDM VFVGADGVVE SGGIINMMGT YQIALVAQSM
501: NKPVYVAAES YKFARLYPLD QKDLEPALRP IDFSVPVPPK VEVERSARDY TPPQYLTLLF TDLGVLTPSV VSDELIQLYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)