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AT1G53800.2
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.987
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHI6eggNOG:ENOG410Y4AYEMBL:AK317481EMBL:CP002684EnsemblPlants:AT1G53800EnsemblPlants:AT1G53800.2entrez:841817
ExpressionAtlas:B9DHC9GeneID:841817GO:GO:0003677Gramene:AT1G53800.2hmmpanther:PTHR34199hmmpanther:PTHR34199:SF2InterPro:IPR003611
KEGG:ath:AT1G53800ncoils:CoilOMA:MQDPKIKPfam:PF07460PhylomeDB:B9DHC9Proteomes:UP000006548RefSeq:NP_001031183.1
STRING:3702.AT1G53800.2TAIR:AT1G53800UniGene:At.24702UniProt:B9DHC9
Coordinates (TAIR10) chr1:+:20081888..20084320
Molecular Weight (calculated) 64416.40 Da
IEP (calculated) 10.41
GRAVY (calculated) -0.91
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSLGTFSDI ATIQPSFQAH LVPLGAQSII HAKSLPNPWR QSCFSKNLKF YTGHSHVRRG KVLITAVATL ETKYPAQKEN ERSSSLSSAS SKSSNGSADD
101: GEEQVDDREK LRRMRISKAN RGNTPWNKGR KHSPETLQKI RERTKIAMQD PKIKMKLANL GHAQNKETRM KIGEGVRMRW ARRKERRKVQ ETCHFEWQNL
201: LAEAAKQGYT DEEELQWDSY NILDQQNQLE WLESVEQRKA IKGAKSNRRA PKSPEQRRRI AEAIAAKWAD PSYRERVCSG LAKYHGIPVG VERRRRRPRS
301: DAEPRKKTPT KKSTRDSEFE RQSQVQVVKV RKRKTPAYKD PLASSKLEMI KSIRAKRVAE ESKKMDAVER ARLLISEAEK AAKVLEIAAL KSPVAQASLL
401: ESKKLIAEAT QLIKSLEMRQ IASDEDGTYP FLLSPQPNDS ESETKDTNDQ ERPGEINGTH TLQINGESLH MNMRSNDLPT FVIEGTTNQF VSDMESNTSQ
501: GGREDIKLGI VGQPNGTRVH PPAESNGAIS LAENHPLPNG YHGIDEKAAS LESGNVTKKW VRGRLVEVTE AA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)