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AT1G53800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.849
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits to 882 proteins in 242 species: Archae - 2; Bacteria - 216; Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other Eukaryotes - 493 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHI6eggNOG:ENOG410Y4AYEMBL:CP002684EnsemblPlants:AT1G53800EnsemblPlants:AT1G53800.1entrez:841817ExpressionAtlas:F4HTD0
GeneID:841817GO:GO:0003677Gramene:AT1G53800.1hmmpanther:PTHR34199hmmpanther:PTHR34199:SF2InterPro:IPR003611ncoils:Coil
PaxDb:F4HTD0Pfam:PF07460PRIDE:F4HTD0ProteinModelPortal:F4HTD0Proteomes:UP000006548RefSeq:NP_564641.2STRING:3702.AT1G53800.2
TAIR:AT1G53800UniGene:At.24702UniProt:F4HTD0
Coordinates (TAIR10) chr1:+:20081888..20084320
Molecular Weight (calculated) 64023.90 Da
IEP (calculated) 10.41
GRAVY (calculated) -0.91
Length 568 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSLDIATIQ PSFQAHLVPL GAQSIIHAKS LPNPWRQSCF SKNLKFYTGH SHVRRGKVLI TAVATLETKY PAQKENERSS SLSSASSKSS NGSADDGEEQ
101: VDDREKLRRM RISKANRGNT PWNKGRKHSP ETLQKIRERT KIAMQDPKIK MKLANLGHAQ NKETRMKIGE GVRMRWARRK ERRKVQETCH FEWQNLLAEA
201: AKQGYTDEEE LQWDSYNILD QQNQLEWLES VEQRKAIKGA KSNRRAPKSP EQRRRIAEAI AAKWADPSYR ERVCSGLAKY HGIPVGVERR RRRPRSDAEP
301: RKKTPTKKST RDSEFERQSQ VQVVKVRKRK TPAYKDPLAS SKLEMIKSIR AKRVAEESKK MDAVERARLL ISEAEKAAKV LEIAALKSPV AQASLLESKK
401: LIAEATQLIK SLEMRQIASD EDGTYPFLLS PQPNDSESET KDTNDQERPG EINGTHTLQI NGESLHMNMR SNDLPTFVIE GTTNQFVSDM ESNTSQGGRE
501: DIKLGIVGQP NGTRVHPPAE SNGAISLAEN HPLPNGYHGI DEKAASLESG NVTKKWVRGR LVEVTEAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)