AT1G53770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.864 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : O-fucosyltransferase family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
O-fucosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G17270.1); Has 69 Blast hits to 67 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20071460..20073708 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 63946.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.86 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||
| Length | 563 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKVSSSTTS SSSSSSPDEE SDLQNLLEES DSQIDQFRIS DEAAEQRPTF DVESLRSRLR RSFKLNLTKK QSIFIFLPIV IILIYLSTDF SNYFSVKVPN 101: SAFRSNTLTG RVHESDLQAL YLLRKQESDL FSIWNHTVSN LSTIDDVKSA VFRQISLNRQ IQNALLSPHK TGNVDIGGSS DGYFAGGSCR KVDQKLNGRK 201: TIQWKPRPDK FLFAICLSGQ MSNHLICLEK HMFFAALLKR VLVIPSHRFD YHYSRIIDID RINTCLGRTV VVSFEEFWKK DKNRKKHHHV HINRFICYFS 301: KPEPCYVDKE HITKLKALGI TVGGKLDTPW EEDIARPSNK TAEEVEANFR SDDDVIAIGD VFYANVEREW VMQPGGPVAH KCRTLIEPNR LILLTAQRFI 401: QTFLGKNYIA LHFRRHGFLK FCNAKNPSCF FPIPQAASCI TRLIEKVEAP VLYLSTDAAE SETGLLQSLL ILNGKTVPLV KRPARDSAEK WDALLYRHGL 501: EGDSQVEAML DKTICALSSV FIGASGSTFT EDILRLRKDW GTASECDEYL CANEQPNFIA DHE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)