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AT1G53720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclophilin 59
Curator
Summary (TAIR10)
Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis– trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles.
Computational
Description (TAIR10)
cyclophilin 59 (CYP59); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, RNA binding, nucleic acid binding; INVOLVED IN: protein folding; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 61647 Blast hits to 39757 proteins in 2942 species: Archae - 163; Bacteria - 9741; Metazoa - 25019; Fungi - 7217; Plants - 5688; Viruses - 226; Other Eukaryotes - 13593 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G53720-MONOMERBioGrid:27035EC:5.2.1.8eggNOG:COG0652eggNOG:KOG0415EMBL:AC024260EMBL:AY059824
EMBL:AY568526EMBL:CP002684EnsemblPlants:AT1G53720EnsemblPlants:AT1G53720.1entrez:841810Gene3D:2.40.100.10Gene3D:3.30.70.330
GeneID:841810Genevisible:Q6Q151GO:GO:0000166GO:GO:0003723GO:GO:0003755GO:GO:0005634GO:GO:0005829
GO:GO:0006457GO:GO:0008270hmmpanther:PTHR11071hmmpanther:PTHR11071:SF156HOGENOM:HOG000186284InParanoid:Q6Q151IntAct:Q6Q151
InterPro:IPR000504InterPro:IPR001878InterPro:IPR002130InterPro:IPR012677InterPro:IPR024936InterPro:IPR029000iPTMnet:Q6Q151
KEGG:ath:AT1G53720KO:K12735ncoils:CoilOMA:HERERSEPANTHER:PTHR11071PaxDb:Q6Q151Pfam:PF00076
Pfam:PF00098Pfam:PF00160Pfam:Q6Q151Pfscan:PS50072Pfscan:PS50102Pfscan:PS50158PhylomeDB:Q6Q151
PIR:E96577PRIDE:Q6Q151PRINTS:PR00153PRO:PR:Q6Q151PROSITE:PS50072PROSITE:PS50102PROSITE:PS50158
ProteinModelPortal:Q6Q151Proteomes:UP000006548RefSeq:NP_175776.2SMART:SM00343SMART:SM00360SMR:Q6Q151STRING:3702.AT1G53720.1
SUPFAM:SSF50891SUPFAM:SSF54928TAIR:AT1G53720tair10-symbols:ATCYP59tair10-symbols:CYP59UniGene:At.37348UniProt:Q6Q151
Coordinates (TAIR10) chr1:+:20057012..20059508
Molecular Weight (calculated) 58832.20 Da
IEP (calculated) 6.20
GRAVY (calculated) -1.15
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)