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AT1G53670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : methionine sulfoxide reductase B 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
methionine sulfoxide reductase B 1 (MSRB1); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: response to oxidative stress, N-terminal protein myristoylation; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B5 (TAIR:AT4G04830.1); Has 8431 Blast hits to 8426 proteins in 2226 species: Archae - 84; Bacteria - 4884; Metazoa - 272; Fungi - 135; Plants - 207; Viruses - 1; Other Eukaryotes - 2848 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G53670-MONOMEREC:1.8.4.12eggNOG:COG0229eggNOG:KOG0856
EMBL:AC024260EMBL:AK117314EMBL:AY087664EMBL:BT030636
EMBL:CP002684EnsemblPlants:AT1G53670EnsemblPlants:AT1G53670.1entrez:841804
Gene3D:2.170.150.20GeneID:841804Genevisible:Q9C8M2GO:GO:0006979
GO:GO:0009507GO:GO:0009570GO:GO:0030091GO:GO:0033743
GO:GO:0046872hmmpanther:PTHR10173hmmpanther:PTHR10173:SF38HOGENOM:HOG000243424
InParanoid:Q9C8M2InterPro:IPR002579InterPro:IPR011057InterPro:IPR028427
KEGG:ath:AT1G53670KO:K07305OMA:TNPINKKPANTHER:PTHR10173
PaxDb:Q9C8M2Pfam:PF01641Pfam:Q9C8M2PhylomeDB:Q9C8M2
PIR:H96576PRIDE:Q9C8M2PRO:PR:Q9C8M2PROSITE:PS51790
ProteinModelPortal:Q9C8M2Proteomes:UP000006548RefSeq:NP_001117484.1RefSeq:NP_564640.2
SMR:Q9C8M2STRING:3702.AT1G53670.1SUPFAM:SSF51316TAIR:AT1G53670
tair10-symbols:ATMSRB1tair10-symbols:MSRB1TIGRfam:TIGR00357TIGRFAMs:TIGR00357
UniGene:At.37365UniProt:Q9C8M2
Coordinates (TAIR10) chr1:+:20036687..20038074
Molecular Weight (calculated) 22608.60 Da
IEP (calculated) 9.20
GRAVY (calculated) -0.59
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSTRLTII QSSFVSARTR LNYVSKTNHS GFACRSLSKP RNLSLSVYSM GSSSSSPKPD NVQEAEKNEF ASLSENEWKK RLTPEQYYIT RQKGTERAFT
101: GEYWNSKTPG VYNCVCCDTP LFDSSTKFDS GTGWPSYYQP IGNNVKTKLD LSIIFMPRQE VVCAVCNAHL GHVFDDGPRP TGKRYCLNSA ALKLNALEKT
201: RD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)