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AT1G53520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chalcone-flavanone isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chalcone-flavanone isomerase family protein; FUNCTIONS IN: chalcone isomerase activity, intramolecular lyase activity; INVOLVED IN: cellular amino acid derivative biosynthetic process, flavonoid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT3G55120.1); Has 396 Blast hits to 396 proteins in 76 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 2; Plants - 376; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
BioGrid:27012eggNOG:ENOG410IU0BeggNOG:ENOG4111QE0EMBL:AC018748EMBL:AC024260EMBL:AY084729EMBL:BT025725
EMBL:CP002684EnsemblPlants:AT1G53520EnsemblPlants:AT1G53520.1entrez:841787Gene3D:3.50.70.10GeneID:841787Genevisible:Q9C8L2
GO:GO:0005504GO:GO:0006631GO:GO:0009507GO:GO:0009570GO:GO:0009813GO:GO:0045430Gramene:AT1G53520.1
gramene_plant_reactome:1119513gramene_plant_reactome:6874887hmmpanther:PTHR28039hmmpanther:PTHR28039:SF6HOGENOM:HOG000005777InParanoid:Q9C8L2InterPro:IPR016087
InterPro:IPR016088KEGG:00941+5.5.1.6KEGG:ath:AT1G53520OMA:TFIFLTWPaxDb:Q9C8L2PDB:4DOLPDBsum:4DOL
Pfam:PF02431Pfam:Q9C8L2PhylomeDB:Q9C8L2PIR:D96575PRIDE:Q9C8L2PRO:PR:Q9C8L2ProteinModelPortal:Q9C8L2
Proteomes:UP000006548RefSeq:NP_175757.1SMR:Q9C8L2STRING:3702.AT1G53520.1SUPFAM:0037263SUPFAM:SSF54626TAIR:AT1G53520
UniGene:At.37393unipathway:UPA00154UniProt:Q9C8L2
Coordinates (TAIR10) chr1:-:19976485..19977915
Molecular Weight (calculated) 30730.60 Da
IEP (calculated) 8.60
GRAVY (calculated) 0.05
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGILAAVPS AVCVSLRISC RNLDNAESIY HFPGKSLNRV SVLQTGNYVS RKGNSLLKNR HCGEISRVIV KSAASSVGNA EDYAEETATS VKFKRSVTLP
101: GCSSPLSLLG TGFREKKFAI IGVKVYAAGY YVNESILSGL SAWTGRSADE IQRDSSLFVS IFQAQAEKSL QIVLVRDVDG KTFWDALDEA ISPRIKSPSS
201: EDTTALSTFR GIFQNRPLNK GSVILLTWIN TSNMLVSVSS GGLPTNVDAT IESGNVTSAL FDVFFGDSPV SPTLKSSVAN QLAMTLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)