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AT1G53460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins in 88 species: Archae - 11; Bacteria - 27; Metazoa - 119; Fungi - 17; Plants - 101; Viruses - 2; Other Eukaryotes - 208 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVX3eggNOG:ENOG410YMTVEMBL:AC018748EMBL:AF446879EMBL:AY052706EMBL:CP002684EnsemblPlants:AT1G53460
EnsemblPlants:AT1G53460.1entrez:841781GeneID:841781Gramene:AT1G53460.1hmmpanther:PTHR23111hmmpanther:PTHR23111:SF24KEGG:ath:AT1G53460
ncoils:CoilOMA:FFDIHENPhylomeDB:Q9LPG2PIR:F96574Proteomes:UP000006548RefSeq:NP_564632.1TAIR:AT1G53460
UniGene:At.14923UniProt:Q9LPG2
Coordinates (TAIR10) chr1:-:19954558..19956509
Molecular Weight (calculated) 36512.50 Da
IEP (calculated) 9.26
GRAVY (calculated) -0.52
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MAILLRSILK NQTLFKTLLK PQCAPLIVSR NFTSEEAYKK PLSVFFEEAV GLRPKSETSE IEEEEEEGNE LKRKLLELER KLIELKKSEP VRKKKQKGEV
101: VISEQNEKRH NLYKLFKGDE EKEVKKHSKE KEDVIRVYKE LPIEMVSFVR LLHKEGYLNK ANFITGEKLD MGNLDEEYAR TFVKFAAERF GKDYQEIAKW
201: LSGSDLKKIV LFGCPSLEKR AVFAAKTLRN FFDIHENNVC EKCVLKEKCK FPNQSVWDGK TKHLHLSVVM KVITLYPLDL THPKLQVPQE VQDSVSRLLT
301: EIQNLSRTIC TPLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)