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AT1G53440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat transmembrane protein kinase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G53430.1); Has 190921 Blast hits to 136069 proteins in 4848 species: Archae - 114; Bacteria - 18757; Metazoa - 52699; Fungi - 11122; Plants - 85531; Viruses - 458; Other Eukaryotes - 22240 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G53440-MONOMERBioGrid:27004EC:2.7.11.1eggNOG:COG4886eggNOG:ENOG410IFCUEMBL:AC018748EMBL:CP002684
EMBL:FJ708658EnsemblPlants:AT1G53440EnsemblPlants:AT1G53440.1entrez:841779Gene3D:2.60.120.200Gene3D:3.80.10.10GeneID:841779
Genevisible:C0LGG9GO:GO:0004674GO:GO:0005524GO:GO:0005886GO:GO:0016021hmmpanther:PTHR27006hmmpanther:PTHR27006:SF35
HOGENOM:HOG000116550InParanoid:C0LGG9InterPro:IPR000719InterPro:IPR001245InterPro:IPR008271InterPro:IPR011009InterPro:IPR013320
InterPro:IPR021720InterPro:IPR032675iPTMnet:C0LGG9KEGG:ath:AT1G53440OMA:WCLRKDLPaxDb:C0LGG9Pfam:C0LGG9
Pfam:PF07714Pfam:PF11721Pfscan:PS50011PhylomeDB:C0LGG9PIR:D96574PRIDE:C0LGG9PRO:PR:C0LGG9
PROSITE:PS00108PROSITE:PS50011ProteinModelPortal:C0LGG9Proteomes:UP000006548RefSeq:NP_175749.1scanprosite:PS00108SMART:SM00220
SMR:C0LGG9STRING:3702.AT1G53440.1SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT1G53440TMHMM:TMhelixUniGene:At.28767
UniGene:At.66887UniProt:C0LGG9
Coordinates (TAIR10) chr1:+:19945959..19951562
Molecular Weight (calculated) 114858.00 Da
IEP (calculated) 6.99
GRAVY (calculated) -0.19
Length 1035 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGFFFSTRKG LLLIIFICLD IFGSNAQLLP EDEVQTLRTI FRKLQNQTVN IERTSCLDRK WNFVAESTSK LPTSNITCDC TFNASSVCRV TNIQLRGFNL
0101: RGIIPPEFGN LTRLTEIDLV LNFLSGTIPT TLSQIPLEIL AVTGNRLSGP FPPQLGQITT LTDVIMESNL FTGQLPPNLG NLRSLKRLLI SSNNITGRIP
0201: ESLSNLKNLT NFRIDGNSLS GKIPDFIGNW TRLVRLDLQG TSMEGPIPAS ISNLKNLTEL RITDLRGPTS PFPDLQNMTN MERLVLRNCL IREPIPEYIG
0301: TSMTMLKLLD LSSNMLNGTI PDTFRSLNAF NFMYLNNNSL TGPVPQFILD SKQNIDLSYN NFTQPPTLSC NQLDVNLISS YPSVTNNSVQ WCLRKDLPCP
0401: GDAHHSSLFI NCGGNRLKVD KDEYADDLNK RGASTFSSVS ERWGYSSSGA WLGNDGATYL ATDTFNLINE STPEYYKTAR LASQSLKYYG LCMRRGSYKV
0501: QLYFAEIMFS NDQTYSSLGR RLFDIYVQGI LLERDFNIAQ RAGGVGKPFL RQVDEVQVNG STLEIHLKWT GKGTNVIPTR GVYGPLISAI TVTPNFKVDT
0601: GKPLSNGVVA GIVIAACVAF GLLVLVILRL TGYLGGKEVD ENEELRGLDL QTGSFTLKQI KRATNNFDPE NKIGEGGFGP VYKGVLADGM TIAVKQLSSK
0701: SKQGNREFVT EIGMISALQH PNLVKLYGCC IEGKELLLVY EYLENNSLAR ALFGTEKQRL HLDWSTRNKV CIGIAKGLAY LHEESRLKIV HRDIKATNVL
0801: LDLSLNAKIS DFGLAKLDEE ENTHISTRIA GTIGYMAPEY AMRGYLTDKA DVYSFGVVCL EIVSGKSNTN YRPKEEFIYL LDWAYVLQEQ GSLLELVDPD
0901: LGTSFSKKEA MRMLNIALLC TNPSPTLRPP MSSVVSMLQG KIKVQPPLVK READPSGSAA MRFKALEHLS QDSESQVSTY TRNKEHKSSS SMDGPWVDSS
1001: FSDPSKDVSL LQQEEGNSSS SSRRLLDDLT DVEIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)