AT1G53390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.967 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: non-intrinsic ABC protein 12 (TAIR:AT2G37010.1); Has 358264 Blast hits to 329272 proteins in 3990 species: Archae - 6355; Bacteria - 285632; Metazoa - 9572; Fungi - 6250; Plants - 5450; Viruses - 13; Other Eukaryotes - 44992 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19918197..19923579 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 122884.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.46 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1109 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNFNTSLVIM LLNLKMSVDR RNWLKHGCNL RLVILVLWLV CYVSNGQTIG DTSDFNNPAV LPLVTQMVYR SLSNSTAALN RELGIRAKFC VKDPDADWNR 0101: AFNFSSNLNF LSSCIKKTQG SIGKRICTAA EMKFYFNGFF NKTNNPGYLK PNVNCNLTSW VSGCEPGWGC SVDPTEQVDL QNSKDFPERR RNCMPCCEGF 0201: FCPRGLTCMI PCPLGAHCPL ATLNKTTSLC EPYTYQLPSG RPNHTCGGAN VWADIRSSGE VFCSAGSYCP TTTQKVPCDS GHYCRMGSTS EKPCFKLTSC 0301: NPNTANQNMH AFGIMVIAAV STILLIIYNC SDQILTTRER RQAKSREAAV KKARAHHRWK AAREAAKKHV SGIRAQITRT FSGKRANQDG DTNKMLGRGD 0401: SSEIDEAIDM STCSSPASSS AAQSSYENED HAAAGSNGRA SLGIEGKRVK GQTLAKIKKT QSQIFKYAYD RIEKEKAMEQ ENKNLTFSGI VKMATNSETR 0501: KRHLMELSFK DLTLTLKSNG KQVLRCVTGS MKPGRITAVM GPSGAGKTSL LSALAGKAVG CKLSGLILIN GKQESIHSYK KIIGFVPQDD VVHGNLTVEE 0601: NLWFHAKCRL PADLSKADKV LVVERIIDSL GLQAVRSSLV GTVEKRGISG GQRKRVNVGL EMVMEPSVLF LDEPTSGLDS ASSQLLLRAL RHEALEGVNI 0701: CMVVHQPSYT LFKTFNDLVL LAKGGLTVYH GSVNKVEEYF SGLGIHVPDR INPPDYYIDV LEGVVISMGN SGIGYKELPQ RWMLHKGYSV PLDMRNNSAA 0801: GLETNPDLGT NSPDNAEQTF ARELWRDVKS NFRLRRDKIR HNFLKSRDLS HRRTPSTWLQ YKYFLGRIAK QRMREAQLQA TDYLILLLAG ACLGSLIKAS 0901: DESFGAPGYI YTIIAVSLLC KIAALRSFSL DKLHYWRESA SGMSSSACFL AKDTIDIFNI LVKPLVYLSM FYFFTNPRST FFDNYIVLVC LVYCVTGIAY 1001: ALAIFLQPST AQLFSVLLPV VLTLVATQPK NSELIRIIAD LSYPKWALEA FVIGNAQKYY GVWMITRCGS LMKSGYDINK WSLCIMILLL VGLTTRGVAF 1101: VGMLILQKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)