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AT1G53320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tubby like protein 7
Curator
Summary (TAIR10)
Member of TLP family
Computational
Description (TAIR10)
tubby like protein 7 (TLP7); CONTAINS InterPro DOMAIN/s: Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 3 (TAIR:AT2G47900.2); Has 954 Blast hits to 946 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 352; Fungi - 19; Plants - 468; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
Protein Annotations
BioGrid:26991eggNOG:ENOG410XQFTeggNOG:KOG2502EMBL:AC008007EMBL:AF370146EMBL:AY059088EMBL:AY092403
EMBL:CP002684EnsemblPlants:AT1G53320EnsemblPlants:AT1G53320.1entrez:841766Gene3D:3.20.90.10GeneID:841766Genevisible:Q93VI8
GO:GO:0003700GO:GO:0005634GO:GO:0005829GO:GO:0005886GO:GO:0006355GO:GO:0009536GO:GO:0009555
GO:GO:0009620GO:GO:0035091GO:GO:0044212Gramene:AT1G53320.1hmmpanther:PTHR16517HOGENOM:HOG000238161InParanoid:Q93VI8
InterPro:IPR000007InterPro:IPR001810InterPro:IPR018066InterPro:IPR025659KEGG:ath:AT1G53320MINT:MINT-8067908OMA:RRMQCNI
PaxDb:Q93VI8Pfam:PF00646Pfam:PF01167Pfam:Q93VI8PhylomeDB:Q93VI8PRIDE:Q93VI8PRINTS:PR01573
PRO:PR:Q93VI8PROSITE:PS01200PROSITE:PS01201ProteinModelPortal:Q93VI8Proteomes:UP000006548RefSeq:NP_564627.1scanprosite:PS01200
scanprosite:PS01201SMR:Q93VI8STRING:3702.AT1G53320.1SUPFAM:SSF54518TAIR:AT1G53320tair10-symbols:AtTLP7tair10-symbols:TLP7
UniGene:At.24299UniProt:Q93VI8
Coordinates (TAIR10) chr1:-:19891237..19893429
Molecular Weight (calculated) 42180.10 Da
IEP (calculated) 10.09
GRAVY (calculated) -0.49
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLSRSLLSR RISNSFRFHQ GETTTAPESE SIPPPSNMAG SSSWSAMLPE LLGEIIRRVE ETEDRWPQRR DVVTCACVSK KWREITHDFA RSSLNSGKIT
101: FPSCLKLPGP RDFSNQCLIK RNKKTSTFYL YLALTPSFTD KGKFLLAARR FRTGAYTEYI ISLDADDFSQ GSNAYVGKLR SDFLGTNFTV YDSQPPHNGA
201: KPSNGKASRR FASKQISPQV PAGNFEVGHV SYKFNLLKSR GPRRMVSTLR CPSPSPSSSS AGLSSDQKPC DVTKIMKKPN KDGSSLTILK NKAPRWHEHL
301: QCWCLNFHGR VTVASVKNFQ LVATVDQSQP SGKGDEETVL LQFGKVGDDT FTMDYRQPLS AFQAFAICLT SFGTKLACE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)