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AT1G53260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.851
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 32763 Blast hits to 18534 proteins in 929 species: Archae - 22; Bacteria - 2420; Metazoa - 15140; Fungi - 5401; Plants - 5313; Viruses - 485; Other Eukaryotes - 3982 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JQXAeggNOG:ENOG410XXEMEMBL:AY954765EMBL:CP002684EnsemblPlants:AT1G53260EnsemblPlants:AT1G53260.1entrez:841759
ExpressionAtlas:Q58G44GeneID:841759Gramene:AT1G53260.1hmmpanther:PTHR31346hmmpanther:PTHR31346:SF4Proteomes:UP000006548RefSeq:NP_175733.2
STRING:3702.AT1G53260.1TAIR:AT1G53260UniGene:At.50949UniProt:Q58G44
Coordinates (TAIR10) chr1:-:19859393..19860421
Molecular Weight (calculated) 30115.80 Da
IEP (calculated) 9.62
GRAVY (calculated) -1.52
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIYSVSHKC YFAFGALVSE DLSHKIKELP KVKWVLPDSY LDGKNKDYGG EPFIDGKAVP YDPKYHEEWI RNNANATNEN RRPRRPRNSD GGRNDRGNQD
101: TGYRRPPPNQ GMGGAPPPPP HIGNNPNMPP HIQPPNMNQN YRGPPPPPNM NQNYQGPPAP NMNQNYQGPP PSNMGQNYQG PPPPNMNQSY QGPPPPNMNQ
201: SYQGPPPSNM GQNYRGPSLP PPNMSQNYEG PPPPNMNGGW SGNYQQNGGY QQQGQGGGMQ QQPYPPNRNQ S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)