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AT1G53240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : mitochondrion 11743114
AmiGO : mitochondrion 11743115
AmiGO : mitochondrion 12492832
AmiGO : mitochondrion 14671022
AmiGO : mitochondrion 15276431
AmiGO : mitochondrion 18385124
AmiGO : plastid 18431481
SwissProt : mitochondrion 16381842
TAIR : mitochondrion 14671022
TAIR : mitochondrion 15276431
TAIR : plastid 18431481
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24727099 (2014): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23851315 (2013): plastid
  • PMID:23444301 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:22923678 (2012): mitochondrion
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:21472856 (2011): mitochondrion
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18385124 (2008): mitochondrion
  • PMID:15276431 (2004): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12492832 (2002): mitochondrion
  • PMID:11743115 (2001): mitochondrion
  • PMID:11743114 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Lactate/malate dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Lactate/malate dehydrogenase family protein; FUNCTIONS IN: malate dehydrogenase activity, copper ion binding; INVOLVED IN: response to cadmium ion, response to salt stress, response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation; LOCATED IN: mitochondrion, cell wall, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT3G15020.1); Has 17502 Blast hits to 17499 proteins in 5422 species: Archae - 240; Bacteria - 12205; Metazoa - 1281; Fungi - 536; Plants - 649; Viruses - 0; Other Eukaryotes - 2591 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G53240-MONOMERBioCyc:MetaCyc:AT1G53240-MONOMERBioGrid:26982BRENDA:1.1.1.37EC:1.1.1.37eggNOG:COG0039eggNOG:KOG1494
EMBL:AC008007EMBL:AF324670EMBL:AF339684EMBL:AJ131205EMBL:AY062580EMBL:AY087304EMBL:AY128783
EMBL:CP002684EnsemblPlants:AT1G53240EnsemblPlants:AT1G53240.1entrez:841757Gene3D:3.40.50.720Gene3D:3.90.110.10GeneID:841757
Genevisible:Q9ZP06GO:GO:0005507GO:GO:0005618GO:GO:0005739GO:GO:0005759GO:GO:0005975GO:GO:0006099
GO:GO:0006108GO:GO:0009409GO:GO:0009507GO:GO:0009651GO:GO:0030060GO:GO:0042742GO:GO:0046686
GO:GO:0048046Gramene:AT1G53240.1gramene_pathway:1.1.1.37gramene_pathway:GLYOXYLATE-BYPASSgramene_pathway:PWY-5690gramene_pathway:PWYQT-4481gramene_plant_reactome:1119533
gramene_plant_reactome:6875741hmmpanther:PTHR11540HOGENOM:HOG000213792InParanoid:Q9ZP06IntAct:Q9ZP06InterPro:IPR001236InterPro:IPR001252
InterPro:IPR001557InterPro:IPR010097InterPro:IPR015955InterPro:IPR016040InterPro:IPR022383iPTMnet:Q9ZP06KEGG:00020+1.1.1.37
KEGG:00270+1.1.1.37KEGG:00620+1.1.1.37KEGG:00630+1.1.1.37KEGG:00680+1.1.1.37KEGG:00710+1.1.1.37KEGG:00720+1.1.1.37KEGG:ath:AT1G53240
KO:K00026OMA:DVVECAFPANTHER:PTHR11540PaxDb:Q9ZP06Pfam:PF00056Pfam:PF02866Pfam:Q9ZP06
PhylomeDB:Q9ZP06PIR:T51311PIRSF:PIRSF000102PRIDE:Q9ZP06PRO:PR:Q9ZP06PROSITE:PS00068ProteinModelPortal:Q9ZP06
Proteomes:UP000006548Reactome:R-ATH-70263Reactome:R-ATH-71403RefSeq:NP_564625.1scanprosite:PS00068SMR:Q9ZP06STRING:3702.AT1G53240.1
SUPFAM:SSF51735SUPFAM:SSF56327SWISS-2DPAGE:Q9ZP06TAIR:AT1G53240tair10-symbols:mMDH1TIGRfam:TIGR01772TIGRFAMs:TIGR01772
UniGene:At.23771UniProt:Q9ZP06
Coordinates (TAIR10) chr1:-:19854966..19856802
Molecular Weight (calculated) 35806.50 Da
IEP (calculated) 8.58
GRAVY (calculated) 0.17
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MFRSMLVRSS ASAKQAVIRR SFSSGSVPER KVAILGAAGG IGQPLALLMK LNPLVSSLSL YDIANTPGVA ADVGHINTRS EVVGYMGDDN LAKALEGADL
101: VIIPAGVPRK PGMTRDDLFN INAGIVKNLC TAIAKYCPHA LINMISNPVN STVPIAAEIF KKAGMYDEKK LFGVTTLDVV RARTFYAGKA NVPVAEVNVP
201: VIGGHAGVTI LPLFSQATPQ ANLSSDILTA LTKRTQDGGT EVVEAKAGKG SATLSMAYAG ALFADACLKG LNGVPDVIEC SYVQSTITEL PFFASKVRLG
301: KNGVEEVLDL GPLSDFEKEG LEALKPELKS SIEKGVKFAN Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)