suba logo
AT1G53200.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 21 Blast hits to 21 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK8CeggNOG:ENOG4111VE2EMBL:CP002684EnsemblPlants:AT1G53200EnsemblPlants:AT1G53200.1entrez:841754ExpressionAtlas:F4HPS6
GeneID:841754Gramene:AT1G53200.1hmmpanther:PTHR36720InParanoid:F4HPS6KEGG:ath:AT1G53200ncoils:CoilOMA:LRRDPTC
PaxDb:F4HPS6Pfam:PF14929PRIDE:F4HPS6ProteinModelPortal:F4HPS6Proteomes:UP000006548RefSeq:NP_175728.2STRING:3702.AT1G53200.1
TAIR:AT1G53200UniGene:At.37447UniProt:F4HPS6
Coordinates (TAIR10) chr1:-:19840486..19843169
Molecular Weight (calculated) 71144.30 Da
IEP (calculated) 6.90
GRAVY (calculated) -0.57
Length 613 amino acids
Sequence (TAIR10)
(BLAST)
001: MVETEEKTDK LEKIKVETEE KTDKLEKIKA KRRRVSSSEI DSDTQKYKRI QRCRAKPSYL LCIGPKSSRS EYLNRLPGLL RELLRNRHWN DASRVLSVLM
101: KGTINDPCPK MNRLKYEAHI QIVSHSETNK NKADEIGRIY DTWIGQIGKQ HKEERLLVWY EQICHFIEHE MNNEAYSTVI SLMQNRDFAM LPRANLFIGI
201: SFYKMWCNKF LKELQPEDAD DNGSVSNISE SGSGSLVECS GRDESVCSLA SEVSARKDSE TSVMKNKKVS HLSISDSETR MDTKVKVMST PYVTPPPQLY
301: AISEENEASL GDGIVEFDPT VINILGDMDP WLLPFKPPED PDCYRKIVND SYYKEAVKYM RQTLQSPPHV SLAALHPLVQ ILLIGGHVDE AMKVVEEMCN
401: KIHDVKPFRI KALMMEKFHR NSDMLAKCYE DILKIDPCCI TTLKKLIGMC LEDEYSRESL TEMIALHVEA SFPEPEIWKE LASCFSNFFE NLDEDRLSVC
501: LDGSEDKRNP QTYSVRYNPT PKTFTKTSWT LRAKWWLNRH FSPQMLETEI KNVTLTGDWE MMTYKAACAS YIYGREFGYV TKVYELLKSS NKREFFKFLR
601: EHRVNGNKMY NFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)