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AT1G53090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SPA1-related 4
Curator
Summary (TAIR10)
Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.
Computational
Description (TAIR10)
SPA1-related 4 (SPA4); FUNCTIONS IN: protein binding, signal transducer activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein kinase, catalytic domain (InterPro:IPR000719), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: SPA1-related 3 (TAIR:AT3G15354.1); Has 39467 Blast hits to 23259 proteins in 713 species: Archae - 38; Bacteria - 5854; Metazoa - 15099; Fungi - 8579; Plants - 4750; Viruses - 0; Other Eukaryotes - 5147 (source: NCBI BLink).
Protein Annotations
BioGrid:26968eggNOG:ENOG410XS0BeggNOG:KOG1033EMBL:AC022520EMBL:AY040023EMBL:AY133883EMBL:CP002684
EnsemblPlants:AT1G53090EnsemblPlants:AT1G53090.1EnsemblPlants:AT1G53090.2entrez:841743Gene3D:2.130.10.10GeneID:841743Genevisible:Q94BM7
GO:GO:0004672GO:GO:0005524GO:GO:0005634GO:GO:0009585GO:GO:0009637GO:GO:0042802GO:GO:0080008
Gramene:AT1G53090.1Gramene:AT1G53090.2hmmpanther:PTHR22847hmmpanther:PTHR22847:SF422HOGENOM:HOG000029775InParanoid:Q94BM7IntAct:Q94BM7
InterPro:IPR000719InterPro:IPR001680InterPro:IPR011009InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472
iPTMnet:Q94BM7KEGG:ath:AT1G53090ncoils:CoilOMA:FECESIIPaxDb:Q94BM7Pfam:PF00400Pfam:Q94BM7
Pfscan:PS50011Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q94BM7PIR:E96571PRIDE:Q94BM7PRINTS:PR00320
PRO:PR:Q94BM7PROSITE:PS00678PROSITE:PS50011PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q94BM7Proteomes:UP000006548
Reactome:R-ATH-349425RefSeq:NP_175717.1RefSeq:NP_849802.1scanprosite:PS00678SMART:SM00220SMART:SM00320SMR:Q94BM7
STRING:3702.AT1G53090.1SUPFAM:SSF50978SUPFAM:SSF56112TAIR:AT1G53090tair10-symbols:SPA4UniGene:At.21898UniProt:Q94BM7
Coordinates (TAIR10) chr1:+:19783748..19786690
Molecular Weight (calculated) 89076.00 Da
IEP (calculated) 5.35
GRAVY (calculated) -0.39
Length 794 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGSSESSSR GLNNTSGVSE FCTDGSKSLS HIDYVRSLLG SHKEANLGGL DDDSIVRALE CEDVSLRQWL DNPDRSVDAF ECFHVFRQIV EIVNAAHSQG
101: IVVHNVRPSC FVMSSFNNVS FIESASCSDS GSDEDATTKS REIGSSRQEE ILSERRSKQQ EEVKKQPFPM KQILAMEMSW YTSHEEDNGS LCNCASDIYR
201: LGVLLFELFC PVSSREEKSR TMSSLRHRVL PPQILLNWPK EASFCLWLLH PEPSCRPSMS ELLQSEFINE PRENLEEREA AMELRDRIEE QELLLEFLFL
301: IQQRKQEAAD KLQDTISLLS SDIDQVVKRQ LVLQQKGRDV RSFLASRKRI RQGAETTAAE EENDDNSIDE ESKLDDTLES TLLESSRLMR NLKKLESVYF
401: ATRYRQIKAA TAAEKPLARY YSALSCNGRS SEKSSMSQPS KDPINDSRQG GWIDPFLEGL CKYLSFSKLR VKADLKQGDL LNSSNLVCAI GFDRDGEFFA
501: TAGVNKKIKI FECESIIKDG RDIHYPVVEL ASRSKLSGIC WNSYIKSQVA SSNFEGVVQV WDVARNQLVT EMKEHEKRVW SIDYSSADPT LLASGSDDGS
601: VKLWSINQGV SIGTIKTKAN ICCVQFPSET GRSLAFGSAD HKVYYYDLRN PKLPLCTMIG HHKTVSYVRF VDSSTLVSSS TDNTLKLWDL SMSISGINET
701: PLHSFMGHTN VKNFVGLSVS DGYIATGSET NEVFVYHKAF PMPVLSYKFK TIDPVSELEV DDASQFISSV CWRGQSSTLV AANSTGNIKI LEMV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)