AT1G53060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.885 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Legume lectin family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Legume lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Lectin (InterPro:IPR016363); BEST Arabidopsis thaliana protein match is: Legume lectin family protein (TAIR:AT1G53080.1); Has 1853 Blast hits to 1833 proteins in 123 species: Archae - 0; Bacteria - 22; Metazoa - 0; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19776052..19776780 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 27012.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.84 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||
| Length | 242 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTFHGDAEYA SEPDGMSKSG AIGLSRDNVP FSHGRAIFIN PVPFKPSSTS SSVYSFKTSF YFVISPRPKN PNPGHGLAFI IVPNDRNDSA SGLGYLSLVN 101: RFSNGNPKNH LFAVEFDVFK DKSLGDINDN HIGINNNSVN STVSKKAGYW YQSKIEGKNR WLFKELKLSG NGYRAWIEYE NGKVTVTIGR SQEKPKRPLI 201: EARVDLSKVF LEKMYVGFAG SMGRGVERHE ILDWSFENSA KD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)