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AT1G53035.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.923
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15358.1); Has 49 Blast hits to 49 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYE5eggNOG:ENOG41115QZEMBL:AF380658EMBL:AK119066EMBL:AY054158EMBL:CP002684EnsemblPlants:AT1G53035
EnsemblPlants:AT1G53035.1entrez:841737GeneID:841737GO:GO:0016021Gramene:AT1G53035.1hmmpanther:PTHR34274hmmpanther:PTHR34274:SF3
HOGENOM:HOG000005986KEGG:ath:AT1G53035OMA:STAHTHIPhylomeDB:Q93VW7Proteomes:UP000006548RefSeq:NP_564621.1STRING:3702.AT1G53035.1
TAIR:AT1G53035TMHMM:TMhelixUniGene:At.19104UniGene:At.74117UniProt:Q93VW7
Coordinates (TAIR10) chr1:-:19761866..19762318
Molecular Weight (calculated) 17023.10 Da
IEP (calculated) 6.24
GRAVY (calculated) 0.62
Length 150 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTAISMNPS LFRVICILHS IIALTSGTLM MFYTEKASIF GPGSEIASKL KGSTPHDELL IQISQSFSGL LLFAIGLVLF MVSFVKDKEF HSFFAGGSVI
101: LYVLMAMWRV LFEWKIEDLA YEWPKQALGD IALAISWVFF LVYSWREKYD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)