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AT1G53000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21472856 (2011): mitochondrion
  • PMID:16618929 (2006): unclear
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein
Curator
Summary (TAIR10)
Encodes a putative CMP-KDO (3-deoxy-D-manno-octulosonate) synthetase.
Computational
Description (TAIR10)
KDSB; FUNCTIONS IN: 3-deoxy-manno-octulosonate cytidylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: lipopolysaccharide biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-deoxy-D-manno-octulosonate cytidylyltransferase (InterPro:IPR004528), Acylneuraminate cytidylyltransferase (InterPro:IPR003329); Has 7496 Blast hits to 7495 proteins in 1549 species: Archae - 38; Bacteria - 4007; Metazoa - 8; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 3395 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G53000-MONOMERBioGrid:26958BRENDA:2.7.7.38EC:2.7.7.38eggNOG:COG1212eggNOG:ENOG410IHX0EMBL:AC019018
EMBL:AJ505021EMBL:AK317553EMBL:CP002684EnsemblPlants:AT1G53000EnsemblPlants:AT1G53000.1entrez:841733Gene3D:3.90.550.10
GeneID:841733Genevisible:Q9C920GO:GO:0005739GO:GO:0005829GO:GO:0008690GO:GO:0009555GO:GO:0009860
GO:GO:0031307GO:GO:0033468GO:GO:0071555Gramene:AT1G53000.1gramene_pathway:2.7.7.38gramene_pathway:PWY-1269gramene_pathway:PWY-5111
gramene_plant_reactome:1119532gramene_plant_reactome:6873936HAMAP:MF_00057hmmpanther:PTHR21485hmmpanther:PTHR21485:SF19HOGENOM:HOG000007602InParanoid:Q9C920
InterPro:IPR003329InterPro:IPR004528InterPro:IPR029044KEGG:00540+2.7.7.38KEGG:ath:AT1G53000KO:K00979OMA:NSGTERC
PaxDb:Q9C920Pfam:PF02348Pfam:Q9C920PhylomeDB:Q9C920PRIDE:Q9C920PRO:PR:Q9C920ProteinModelPortal:Q9C920
Proteomes:UP000006548RefSeq:NP_175708.2SMR:Q9C920STRING:3702.AT1G53000.1SUPFAM:SSF53448SwissPalm:Q9C920TAIR:AT1G53000
tair10-symbols:KDSBTIGRfam:TIGR00466TIGRFAMs:TIGR00466TMHMM:TMhelixUniGene:At.18072unipathway:UPA00030UniPathway:UPA00358
UniProt:Q9C920
Coordinates (TAIR10) chr1:-:19745330..19747133
Molecular Weight (calculated) 32246.70 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.29
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVCSSSSSS QKTWIVNGIL AGTAIAAAIG ARAYLGRSKK FRSRVVGIIP ARYASSRFEG KPLVQILGKP MIQRTWERSK LATTLDHIVV ATDDERIAEC
101: CRGFGADVIM TSESCRNGTE RCNEALEKLE KKYDVVVNIQ GDEPLIEPEI IDGVVKALQV TPDAVFSTAV TSLKPEDGLD PNRVKCVVDN RGYAIYFSRG
201: LIPYNKSGKV NPDFPYMLHL GIQSFDSKFL KVYSELQPTP LQQEEDLEQL KVLENGYKMK VIKVDHEAHG VDTPDDVEKI ESLMRERNMS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)