suba logo
AT1G52980.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GTP-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), NGP1, N-terminal (InterPro:IPR012971); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT3G07050.1); Has 37841 Blast hits to 9407 proteins in 1963 species: Archae - 139; Bacteria - 33291; Metazoa - 1149; Fungi - 897; Plants - 387; Viruses - 125; Other Eukaryotes - 1853 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1161eggNOG:KOG2423EMBL:AC019018EMBL:AK319049
EMBL:CP002684EnsemblPlants:AT1G52980EnsemblPlants:AT1G52980.1entrez:841731
Gene3D:1.10.1580.10Gene3D:3.40.50.300GeneID:841731Genevisible:Q9C923
GO:GO:0003924GO:GO:0005525GO:GO:0005730GO:GO:0042254
hmmpanther:PTHR11089hmmpanther:PTHR11089:SF9HOGENOM:HOG000189714InterPro:IPR006073
InterPro:IPR012971InterPro:IPR023179InterPro:IPR024929InterPro:IPR027417
InterPro:IPR030378iPTMnet:Q9C923KEGG:ath:AT1G52980KO:K14537
OMA:YEQQDVKPANTHER:PTHR11089:SF9PaxDb:Q9C923Pfam:PF01926
Pfam:PF08153Pfam:Q9C923Pfscan:PS51721PhylomeDB:Q9C923
PRIDE:Q9C923PRINTS:PR00326PRO:PR:Q9C923PROSITE:PS51721
ProteinModelPortal:Q9C923Proteomes:UP000006548RefSeq:NP_175706.1SMR:Q9C923
STRING:3702.AT1G52980.1SUPFAM:SSF52540TAIR:AT1G52980UniGene:At.43550
UniProt:Q9C923
Coordinates (TAIR10) chr1:+:19737493..19740201
Molecular Weight (calculated) 65041.00 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.78
Length 576 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKKEKKANV SGKPKHSLDA NRADGKKKTT ETRSKSTVNR LKMYKTRPKR NAGGKILSNE YQSKELPNSR IAPDRRWFGN TRVVNQKELE YFREELQTKM
101: SSNYNVILKE RKLPMSLLTD NKKQSRVHLL DMEPFQDAFG RKTKRKRPKL VASDYEALVK KAAESQDAFE EKNGAGPSGE GGEEEDGFRD LVRHTMFEKG
201: QSKRIWGELY KVIDSSDVIV QVIDARDPQG TRCHHLEKTL KEHHKHKHMI LLLNKCDLVP AWATKGWLRV LSKEYPTLAF HASVNKSFGK GSLLSVLRQF
301: ARLKSDKQAI SVGFVGYPNV GKSSVINTLR TKNVCKVAPI PGETKVWQYI TLTKRIFLID CPGVVYQSRD TETDIVLKGV VRVTNLEDAS EHIGEVLRRV
401: KKEHLQRAYK IKDWEDDHDF LLQLCKSSGK LLKGGEPDLM TGAKMILHDW QRGRIPFFVP PPKLDNVASE SEVIVPGIDK EAIADNSQAA AALKAIAGIM
501: STQQQKDVPV QRDFYDEKDL KDDKKAKEST ETDAENGTDA EEDEDAVSED GVESDSDADE DAVSENDEED ESDSAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)