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AT1G52930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25605960 (2015): nucleus nuclear matrix nucleolus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal RNA processing Brix domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal RNA processing Brix domain protein; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT3G15460.1); Has 418 Blast hits to 416 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5154eggNOG:KOG2971EMBL:AC019018EMBL:AF370290EMBL:AY063038EMBL:CP002684EnsemblPlants:AT1G52930
EnsemblPlants:AT1G52930.1entrez:841726GeneID:841726GO:GO:0000027GO:GO:0005730GO:GO:0005829GO:GO:0006364
Gramene:AT1G52930.1hmmpanther:PTHR13634HOGENOM:HOG000212937InterPro:IPR004154InterPro:IPR007109InterPro:IPR026532KEGG:ath:AT1G52930
KO:K14820OMA:WISNTTGPANTHER:PTHR13634Pfam:PF04427Pfscan:PS50833PhylomeDB:Q9C928PIR:F96570
PROSITE:PS50833Proteomes:UP000006548RefSeq:NP_564618.1SMART:SM00879STRING:3702.AT1G52930.1SUPFAM:SSF52954TAIR:AT1G52930
UniGene:At.18077UniProt:Q9C928
Coordinates (TAIR10) chr1:+:19711261..19713103
Molecular Weight (calculated) 36698.60 Da
IEP (calculated) 10.36
GRAVY (calculated) -0.68
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRKRKHSET EAPAPVKKSD EPAPDRPKRT LLGWKDKSEG EAEKAKALTS SGFKNKEKVL VTCSRRISFR YRSLMLNIVS LLPHCKKDSK VEAKSSKGAT
101: LNELIELKNS NSCLFFECRK HKDLYMWMVK SPNGPSVKFL VKAVHAMEEM KLTGNHLKGS RPLLTFSSNF DKDAHWKLLK EMLTQVFGIP KEHRKSKPYH
201: DHVFVFSIVD EHIWFRNYQI SVPHNESDKI AKGGLDKMTL IEVGPRFCLN PIKIFAGSFG GPTLYENPLY VSPNQIRALE KRNKAGKFAK KIKAKTRKKM
301: HELSNPLEPD EFADMWKDDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)