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AT1G52890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC domain containing protein 19
Curator
Summary (TAIR10)
encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.
Computational
Description (TAIR10)
NAC domain containing protein 19 (NAC019); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 3 (TAIR:AT3G15500.1); Has 3041 Blast hits to 3033 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3041; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:26947DNASU:841722eggNOG:ENOG410IKRReggNOG:ENOG4111FG3EMBL:AC019018EMBL:AY065268EMBL:AY117224
EMBL:CP002684EnsemblPlants:AT1G52890EnsemblPlants:AT1G52890.1entrez:841722EvolutionaryTrace:Q9C932GeneID:841722Genevisible:Q9C932
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009414Gramene:AT1G52890.1hmmpanther:PTHR31719
hmmpanther:PTHR31719:SF34HOGENOM:HOG000237406InParanoid:Q9C932IntAct:Q9C932InterPro:IPR003441KEGG:ath:AT1G52890OMA:MGIQETD
PaxDb:Q9C932PDB:1UT4PDB:1UT7PDB:3SWMPDB:3SWPPDB:4DULPDBsum:1UT4
PDBsum:1UT7PDBsum:3SWMPDBsum:3SWPPDBsum:4DULPfam:PF02365Pfam:Q9C932Pfscan:PS51005
PhylomeDB:Q9C932PIR:B96570PRIDE:Q9C932PRO:PR:Q9C932PROSITE:PS51005ProteinModelPortal:Q9C932Proteomes:UP000006548
RefSeq:NP_175697.1SMR:Q9C932STRING:3702.AT1G52890.1SUPFAM:SSF101941TAIR:AT1G52890tair10-symbols:ANAC019tair10-symbols:NAC019
UniGene:At.28621UniProt:Q9C932
Coordinates (TAIR10) chr1:-:19697292..19698444
Molecular Weight (calculated) 35816.60 Da
IEP (calculated) 6.41
GRAVY (calculated) -0.65
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIQETDPLT QLSLPPGFRF YPTDEELMVQ YLCRKAAGYD FSLQLIAEID LYKFDPWVLP NKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKIISTEGQR VGIKKALVFY IGKAPKGTKT NWIMHEYRLI EPSRRNGSTK LDDWVLCRIY KKQSSAQKQV YDNGIANARE FSNNGTSSTT SSSSHFEDVL
201: DSFHQEIDNR NFQFSNPNRI SSLRPDLTEQ KTGFHGLADT SNFDWASFAG NVEHNNSVPE LGMSHVVPNL EYNCGYLKTE EEVESSHGFN NSGELAQKGY
301: GVDSFGYSGQ VGGFGFM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)