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AT1G52870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mpv17/PMP22 (InterPro:IPR007248); BEST Arabidopsis thaliana protein match is: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (TAIR:AT4G03410.2); Has 410 Blast hits to 410 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 20; Plants - 175; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111SYHeggNOG:KOG1944EMBL:AY085076EMBL:CP002684EnsemblPlants:AT1G52870EnsemblPlants:AT1G52870.1entrez:841720
ExpressionAtlas:Q8LF31GeneID:841720GO:GO:0016021Gramene:AT1G52870.1hmmpanther:PTHR11266hmmpanther:PTHR11266:SF16HOGENOM:HOG000030608
InterPro:IPR007248PANTHER:PTHR11266PhylomeDB:Q8LF31Proteomes:UP000006548RefSeq:NP_564616.1STRING:3702.AT1G52870.2TAIR:AT1G52870
UniGene:At.23745UniProt:Q8LF31
Coordinates (TAIR10) chr1:+:19685856..19687310
Molecular Weight (calculated) 34462.20 Da
IEP (calculated) 5.82
GRAVY (calculated) -0.00
Length 306 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAASLHTSI SPRSFLPLSK PSLKPHRSQI LLRNKQRNCV SCALIRDEID LIPVQSRDRT DHEEGSVVVM STETAVDGNE SVVVGFSAAT SEGQLSLEGF
101: PSSSSSGADL GDEKRRENEE MEKMIDRTIN ATIVLAAGSY AITKLLTIDH DYWHGWTLFE ILRYAPQHNW IAYEEALKQN PVLAKMVISG VVYSVGDWIA
201: QCYEGKPLFE IDRARTLRSG LVGFTLHGSL SHFYYQFCEE LFPFQDWWVV PVKVAFDQTV WSAIWNSIYF TVLGFLRFES PISIFKELKA TFLPMLTVGS
301: FGHLLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)