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AT1G52825.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.792
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2346 (InterPro:IPR018625); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14615.1); Has 52 Blast hits to 49 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z10YEMBL:AK117948EMBL:BT004663EMBL:CP002684
EnsemblPlants:AT1G52825EnsemblPlants:AT1G52825.1entrez:841716GeneID:841716
GO:GO:0005739GO:GO:0016021GO:GO:0033617Gramene:AT1G52825.1
hmmpanther:PTHR35700HOGENOM:HOG000005713IntAct:Q8GXZ7InterPro:IPR018625
KEGG:ath:AT1G52825OMA:KFMGNHSPfam:PF09803PhylomeDB:Q8GXZ7
Proteomes:UP000006548RefSeq:NP_849801.1TAIR:AT1G52825TMHMM:TMhelix
UniGene:At.46095UniGene:At.67595UniGene:At.73951UniProt:Q8GXZ7
Coordinates (TAIR10) chr1:-:19670658..19670894
Molecular Weight (calculated) 8714.78 Da
IEP (calculated) 10.47
GRAVY (calculated) -0.21
Length 78 amino acids
Sequence (TAIR10)
(BLAST)
1: MSSVGTSKGI LEIAKFGVYV AVPIVLIYTF ANNSTNIKKF MGNHSYVVYP KEAPRPPSPE ELREMAKQLA LKKKKNPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)