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AT1G52820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.728
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G03070.1); Has 7837 Blast hits to 7765 proteins in 980 species: Archae - 0; Bacteria - 1096; Metazoa - 64; Fungi - 795; Plants - 4683; Viruses - 0; Other Eukaryotes - 1199 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2304-MONOMEReggNOG:COG3491eggNOG:KOG0143EMBL:AC019018
EMBL:CP002684EnsemblPlants:AT1G52820EnsemblPlants:AT1G52820.1entrez:841715
Gene3D:2.60.120.330GeneID:841715GO:GO:0046872GO:GO:0051213
Gramene:AT1G52820.1hmmpanther:PTHR10209hmmpanther:PTHR10209:SF211HOGENOM:HOG000241611
InterPro:IPR005123InterPro:IPR026992InterPro:IPR027443KEGG:ath:AT1G52820
OMA:SAPERWAPfam:PF03171Pfam:PF14226Pfscan:PS51471
PhylomeDB:Q9C936PIR:D96569PROSITE:PS51471Proteomes:UP000006548
RefSeq:NP_175691.1SMR:Q9C936STRING:3702.AT1G52820.1SUPFAM:SSF51197
TAIR:AT1G52820UniGene:At.37519UniProt:Q9C936
Coordinates (TAIR10) chr1:+:19669216..19670321
Molecular Weight (calculated) 36421.50 Da
IEP (calculated) 6.01
GRAVY (calculated) -0.42
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSETPLLPL RLPVIDFSNK NLKPGEPEWD LTRADVQKAL QDYGYFEASF DRIPFELRKS VFGALEELFD LPLQTKLRNV SKKPFHGYVG QYPMVPLYES
101: MGIDDSDIAE KVDAFTEKLW PQGNISFSTT IQSFSKKLSE LDITIRRMIM ESFGLDKYID EHLHSTNYLL RVMKYKGPDT EETKVGLNAH TDKNIVTILY
201: QNHVEGLEVQ TKDKNWIKVK PTQDSFTVMI GDSLYALLNG RLHSPYHRVM MTGTETRYSL GLFSIPKAGH IVSSPDELVD EEHPRLFKPF DHVEFLQFYY
301: TEAGQRSQSA LKTYCGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)