AT1G52770.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.986 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Phototropic-responsive NPH3 family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G15570.1); Has 830 Blast hits to 821 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 829; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:19656009..19657546 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50316.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.15 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||
| Length | 454 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKTSSPESA TISTKSPSTS TGKMECSWFD DGCILGIDYF VKTIAGIKSK GVRPDLIGSI IVHYASQWLP DLSDIVLNSD DQQPQPQQQS ESFSVTAFVM 101: KKRSFVETLI GIIPPERDSV PCDFLLRLLR TANMVGADAN YKAELEARIS WQLDQASLKE LMIPSFSHTC GTLLDVELMT RLVKKFAGLD NEGVKSGASL 201: IKVAKLVDSY LAEAALDGDL TLSEFISLVE ALPNHARVTE DGLYRAIDTY LKAHPNVTKQ ERKRLCGLID SNKLSMEASL HAAQNDRLPV RTIIQVLFSE 301: QAKLSHRSHN NIEWSGSSFS GVRSSPNPSG SHYSDSGPAR CTSKREINVQ QAEIRRLRED MAKLKCECEA MQTQLHKLVE KKGTCTSGNK GFFRWKKLGF 401: RSGLSVSVVE NTNGEEFGNN GEGENFEYVT QTPGNMMTKL VKGRTPSRWR KSMS |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)