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AT1G52740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : histone H2A protein 9
Curator
Summary (TAIR10)
Encodes HTA9, a histone H2A protein.
Computational
Description (TAIR10)
histone H2A protein 9 (HTA9); FUNCTIONS IN: DNA binding; INVOLVED IN: detection of temperature stimulus, defense response to bacterium, regulation of flower development; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 11 (TAIR:AT3G54560.1); Has 3910 Blast hits to 3905 proteins in 353 species: Archae - 0; Bacteria - 0; Metazoa - 2573; Fungi - 292; Plants - 612; Viruses - 4; Other Eukaryotes - 429 (source: NCBI BLink).
Protein Annotations
BioGrid:26932eggNOG:COG5262eggNOG:KOG1757EMBL:AC019018EMBL:AY054557EMBL:AY058147EMBL:AY064631
EMBL:AY084390EMBL:CP002684EnsemblPlants:AT1G52740EnsemblPlants:AT1G52740.1entrez:841707Gene3D:1.10.20.10GeneID:841707
Genevisible:Q9C944GO:GO:0000786GO:GO:0000790GO:GO:0003677GO:GO:0005773GO:GO:0006342GO:GO:0009266
GO:GO:0042742Gramene:AT1G52740.1hmmpanther:PTHR23430HOGENOM:HOG000234652InParanoid:Q9C944IntAct:Q9C944InterPro:IPR002119
InterPro:IPR007125InterPro:IPR009072InterPro:IPR032454InterPro:IPR032458KEGG:ath:AT1G52740KO:K11251OMA:IHRYLMN
PaxDb:Q9C944Pfam:PF00125Pfam:PF16211Pfam:Q9C944PhylomeDB:Q9C944PIR:D96568PRIDE:Q9C944
PRINTS:PR00620PRO:PR:Q9C944PROSITE:PS00046ProteinModelPortal:Q9C944Proteomes:UP000006548RefSeq:NP_175683.1scanprosite:PS00046
SMART:SM00414SMR:Q9C944STRING:3702.AT1G52740.1SUPFAM:SSF47113TAIR:AT1G52740tair10-symbols:HTA9UniGene:At.22624
UniGene:At.37537UniProt:Q9C944
Coordinates (TAIR10) chr1:+:19645409..19646221
Molecular Weight (calculated) 14272.50 Da
IEP (calculated) 11.01
GRAVY (calculated) -0.34
Length 134 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGKGAKGLI MGKPSGSDKD KDKKKPITRS SRAGLQFPVG RVHRLLKTRS TAHGRVGATA AVYTAAILEY LTAEVLELAG NASKDLKVKR ISPRHLQLAI
101: RGDEELDTLI KGTIAGGGVI PHIHKSLINK SAKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)