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AT1G52670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Single hybrid motif superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Single hybrid motif superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT3G15690.2); Has 3136 Blast hits to 3136 proteins in 1282 species: Archae - 2; Bacteria - 2438; Metazoa - 2; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).
Protein Annotations
DIP:DIP-58511NeggNOG:ENOG410IVTNeggNOG:ENOG41120W7EMBL:AK227234EMBL:AY065213EMBL:AY088184EMBL:AY122930
EMBL:CP002684EnsemblPlants:AT1G52670EnsemblPlants:AT1G52670.1entrez:841699GeneID:841699GO:GO:0009507Gramene:AT1G52670.1
hmmpanther:PTHR18866hmmpanther:PTHR18866:SF99HOGENOM:HOG000006206InterPro:IPR000089InterPro:IPR011053KEGG:ath:AT1G52670OMA:PEGVHTN
Pfam:PF00364PhylomeDB:Q8VZ68Proteomes:UP000006548RefSeq:NP_564612.1STRING:3702.AT1G52670.1SUPFAM:SSF51230TAIR:AT1G52670
UniGene:At.11641UniProt:Q8VZ68
Coordinates (TAIR10) chr1:-:19615119..19617420
Molecular Weight (calculated) 29575.50 Da
IEP (calculated) 8.60
GRAVY (calculated) -0.22
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSCSLGAPK VRIFATNFSR LRCGNLLIPN NQRLFVDQSP MKYLSLRTTL RSVKAIQLST VPPAETEAIA DVKDSDETKS TVVNTHLMPK SSEVEALISE
101: ITDSSSIAEF ELKLGGFRLY VARKLTDESS PPPQQIQPVV AASATPEGVH TNGSATSSSL AITKTSSSSA DRPQTLANKA ADQGLVILQS PTVGYFRRSK
201: TIKGKRTPTI CKEKDIVKEG QVLCYIEQLG GQIPVESDVS GEIVKILRED GEPVGYNDAL ITVLPSFPGI KKLQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)