AT1G52660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G15700.1); Has 8463 Blast hits to 8404 proteins in 284 species: Archae - 3; Bacteria - 77; Metazoa - 3; Fungi - 0; Plants - 8374; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19613475..19614796 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42465.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.48 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||
| Length | 379 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKDFKSLVT RCIYVGKMND NAKKLKIATE ELKDLGNNVM KRVKLCEEQQ QMKRLDKVQT WLRQADTVIK EAEEYFLMSS SSSSSGLISS SHKMEKKICK 101: KLKEVQEIKS RGMFEVVAES TGGIGGGAGG GLTIKDSDEQ TIGLEAVSGL VWRCLTMENT GIIGLYGVEG VGKTTVLTQV NNRLLQQKAN GFDFVLWVFV 201: SKNLNLQKIQ DTIREKIGFL DRTWTSKSEE EKAAKIFEIL SKRRFALFLD DVWEKVDLVK AGVPPPDAQN RSKIVFTTCS EEVCKEMSAQ TKIKVEKLAW 301: ERAWDLFKKN VGEDTIKSHP DIAKVAQEVA ARCDGLPLAL VTIGRAMASK KTPQEWRDAL YILSNSPPNF SVLKLLDRN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)