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AT1G52630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.975
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT5G35570.1); Has 803 Blast hits to 801 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 803; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IE8SeggNOG:ENOG4111F2SEMBL:AY074537EMBL:AY096411
EMBL:CP002684EnsemblPlants:AT1G52630EnsemblPlants:AT1G52630.1entrez:841695
ExpressionAtlas:Q8RY81GeneID:841695GO:GO:0016757Gramene:AT1G52630.1
hmmpanther:PTHR31741hmmpanther:PTHR31741:SF2HOGENOM:HOG000006343InterPro:IPR019378
InterPro:IPR024709KEGG:00514+2.4.1.221KEGG:ath:AT1G52630OMA:QFDYIES
Pfam:PF10250PhylomeDB:Q8RY81PIRSF:PIRSF009360Proteomes:UP000006548
RefSeq:NP_175672.2TAIR:AT1G52630TMHMM:TMhelixUniGene:At.28789
unipathway:UPA00378UniProt:Q8RY81
Coordinates (TAIR10) chr1:-:19606470..19608526
Molecular Weight (calculated) 49549.90 Da
IEP (calculated) 7.47
GRAVY (calculated) -0.06
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MIGSPVKPLF VFVLTFSLLL VVILLSPSPH ILQIPFPSGS SVGSSDIWSV KRIMEWRPCK WWLQGHLTPL PAKTNGYIRV DCYGGLNQMR RDLCDGVGIA
101: RLLNATLVLP KFEVAAYWNE SSGFADVFDV DYFIQKMSGY IEVVKELPKD IASKEPFKVD CSKRKGQFDY IESVLPLLLE HHYISFTPAM SQRRDRYPEY
201: ARATLCQACY SAIHLTSSLE KKAVELFDAI PKPFLSLHLR FEPDMVAYSQ CEYPNLSPSS IAAIEAARAD RKPWTGELAQ TWRKRGKCPL TPNETVLMLQ
301: SLNIPTSTNI YLAAGDGLME MEGFTSVYTN VFTKSVLLNQ EDFTRMHGNT KAALDYHVSI NSDAYVATYF GNMDKIVAAM RTYKQMHNTL FLSRKAFAEL
401: TSQGLEGAEL KKALWEVHKS DFAIGRGFAL PDCFCEFEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)