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AT1G52580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.897
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RHOMBOID-like protein 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RHOMBOID-like protein 5 (RBL5); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 1 (TAIR:AT2G29050.1); Has 6054 Blast hits to 6053 proteins in 1760 species: Archae - 140; Bacteria - 3757; Metazoa - 520; Fungi - 179; Plants - 346; Viruses - 0; Other Eukaryotes - 1112 (source: NCBI BLink).
Protein Annotations
EC:3.4.21.-eggNOG:COG0705eggNOG:KOG2289EMBL:AC008016
EMBL:CP002684EnsemblPlants:AT1G52580EnsemblPlants:AT1G52580.1entrez:841690
Gene3D:1.20.1540.10GeneID:841690Genevisible:Q9SSR0GO:GO:0004252
GO:GO:0016021GO:GO:0016485Gramene:AT1G52580.1hmmpanther:PTHR22936
hmmpanther:PTHR22936:SF41HOGENOM:HOG000239666InParanoid:Q9SSR0InterPro:IPR002610
InterPro:IPR022764KEGG:ath:AT1G52580MEROPS:S54.A01OMA:TEARCAT
PANTHER:PTHR22936PaxDb:Q9SSR0Pfam:PF01694PhylomeDB:Q9SSR0
PIR:E96566PRIDE:Q9SSR0PRO:PR:Q9SSR0ProteinModelPortal:Q9SSR0
Proteomes:UP000006548RefSeq:NP_175667.1STRING:3702.AT1G52580.1SUPFAM:SSF144091
TAIR:AT1G52580tair10-symbols:ATRBL5tair10-symbols:RBL5TMHMM:TMhelix
UniGene:At.37569UniGene:At.37570UniProt:Q9SSR0
Coordinates (TAIR10) chr1:+:19587637..19588958
Molecular Weight (calculated) 34557.00 Da
IEP (calculated) 9.22
GRAVY (calculated) 0.30
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKRPPIPPD IENGPPPPAR PHFRPPIPVP WVAWLVPLIL AANFVTFATT MYVNDCPARS DECLLFDVLG RLSFQPIKEN MLLGPSIPTL RKLGALERRL
101: VEEGERWRLI SCIWLHGGFL HLMANMISLM CIGMRLEQEF GFMRIGALYV ISGLGGSLVS CLTDSQGERV SVGASGALFG LLGAMLSELI TNWTIYENKC
201: TALMTLILII VLNLSVGFLP RVDNSAHFGG FLAGFFLGFV LLLRPQYGYV NPKYIPPGYD MKHKKSKHKC YQHIFRFTSL AILLAGFIAG YTKLLREHTI
301: QSMPFRDFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)