AT1G52500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MUTM homolog-1 | ||||||||||||||||
| Curator Summary (TAIR10) |
Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Has abasic lyase activity and does not exhibit significant cleavage of a double-stranded oligonucleotide that contained 8-oxo-guanine. Sequence similarity to atmmh-1. | ||||||||||||||||
| Computational Description (TAIR10) |
MMH-2; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), DNA glycosylase/AP lyase, H2TH DNA-binding (InterPro:IPR015886), DNA glycosylase/AP lyase, catalytic domain (InterPro:IPR012319), DNA glycosylase/AP lyase (InterPro:IPR000191); Has 7507 Blast hits to 7502 proteins in 2073 species: Archae - 6; Bacteria - 4936; Metazoa - 104; Fungi - 102; Plants - 73; Viruses - 8; Other Eukaryotes - 2278 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19560043..19562055 | ||||||||||||||||
| Molecular Weight (calculated) | 30763.20 Da | ||||||||||||||||
| IEP (calculated) | 9.52 | ||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||
| Length | 274 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPELPEVEAA RRAIEENCLG KKIKRVIIAD DNKVIHGISP SDFQTSILGK TIISARRKGK NLWLELDSPP FPSFQFGMAG AIYIKGVAVT KYKRSAVKDS 101: EEWPSKYSKF FVELDDGLEL SFTDKRRFAK VRLLANPTSV SPISELGPDA LLEPMTVDEF AESLAKKKIT IKPLLLDQGY ISGIGNWIAD EVLYQARIHP 201: LQTASSLSKE QCEALHTSIK EVIQHAVQVN ADSKEFPVEW LFHFRWGKKA GKVNGKLSHH LSINLMKQNL GFCR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)