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AT1G52500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.823
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MUTM homolog-1
Curator
Summary (TAIR10)
Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Has abasic lyase activity and does not exhibit significant cleavage of a double-stranded oligonucleotide that contained 8-oxo-guanine. Sequence similarity to atmmh-1.
Computational
Description (TAIR10)
MMH-2; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), DNA glycosylase/AP lyase, H2TH DNA-binding (InterPro:IPR015886), DNA glycosylase/AP lyase, catalytic domain (InterPro:IPR012319), DNA glycosylase/AP lyase (InterPro:IPR000191); Has 7507 Blast hits to 7502 proteins in 2073 species: Archae - 6; Bacteria - 4936; Metazoa - 104; Fungi - 102; Plants - 73; Viruses - 8; Other Eukaryotes - 2278 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G52500EnsemblPlants:AT1G52500.1entrez:841681hmmpanther:PTHR22993hmmpanther:PTHR22993:SF17Pfam:PF01149Pfam:PF06831
Pfscan:PS51068tair10-symbols:ATFPG-2tair10-symbols:ATMMH-2tair10-symbols:FPG-2tair10-symbols:MMH-2TIGRfam:TIGR00577
Coordinates (TAIR10) chr1:+:19560043..19562055
Molecular Weight (calculated) 30763.20 Da
IEP (calculated) 9.52
GRAVY (calculated) -0.26
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MPELPEVEAA RRAIEENCLG KKIKRVIIAD DNKVIHGISP SDFQTSILGK TIISARRKGK NLWLELDSPP FPSFQFGMAG AIYIKGVAVT KYKRSAVKDS
101: EEWPSKYSKF FVELDDGLEL SFTDKRRFAK VRLLANPTSV SPISELGPDA LLEPMTVDEF AESLAKKKIT IKPLLLDQGY ISGIGNWIAD EVLYQARIHP
201: LQTASSLSKE QCEALHTSIK EVIQHAVQVN ADSKEFPVEW LFHFRWGKKA GKVNGKLSHH LSINLMKQNL GFCR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)